Publications by Computational Biology and Bioinformatics

Raybould, M. et al. (2024) “Contextualising the developability risk of antibodies with lambda light chains using enhanced therapeutic antibody profiling”, Communications Biology, 7(1).

Raybould, M. et al. (2024) “The Observed T cell receptor Space database enables paired-chain repertoire mining, coherence analysis and language modelling”, bioRxiv.

Quast, N. et al. (2024) “T-cell receptor structures and predictive models reveal comparable alpha and beta chain structural diversity despite differing genetic complexity”, bioRxiv.

Crook, O. et al. (2024) “Inferring residue level hydrogen deuterium exchange with ReX”, bioRxiv.

Clarkson, J. et al. (2024) “Split Conformal Prediction under Data Contamination”, in Proceedings of Machine Learning Research, pp. 5–27.

Wills, S. et al. (2024) “Expanding the scope of a catalogue search to bioisosteric fragment merges using a graph database approach”, bioRxiv.

Vandenbulcke, S. et al. (2024) “msqrob2TMT: robust linear mixed models for inferring differential abundant proteins in labelled experiments with arbitrarily complex design”, bioRxiv.

Ouyang, R. et al. (2024) “L2G2G: A Scalable Local-to-Global Network Embedding with Graph Autoencoders”, in Complex Networks & Their Applications XII. Springer Nature, pp. 400–412.

Villanueva, E. et al. (2024) “System-wide analysis of RNA and protein subcellular localization dynamics”, Nature Methods, 21(1), pp. 60–71.

He, Y. et al. (2024) “ROBUST ANGULAR SYNCHRONIZATION VIA DIRECTED GRAPH NEURAL NETWORKS”, in 12th International Conference on Learning Representations, ICLR 2024.