Publications by Computational Biology and Bioinformatics

Adams, J. et al. (2025) “Individualised Counterfactual Examples Using Conformal Prediction Intervals”, in Proceedings of Machine Learning Research, pp. 425–444.

Condado-Morales, I. et al. (2024) “A comparative study of the developability of full-length antibodies, fragments, and bispecific formats reveals higher stability risks for engineered constructs”, mAbs, 16(1), p. 2403156.

Hung, E., Mantziou, A. and Reinert, G. (2024) “A Bayesian mixture model for Poisson network autoregression.”

Mantziou, A. et al. (2024) “GDP nowcasting with large-scale inter-industry payment data in real time -- A network approach”, arXiv.

Erasmus, M. et al. (2024) “AIntibody: an experimentally validated in silico antibody discovery design challenge”, Nature Biotechnology, pp. 1–6.

Limnios, S. et al. (2024) “SaGess: A Sampling Graph Denoising Diffusion Model for Scalable Graph Generation”, in ECAI 2024. IOS Press.

Aminian, G. et al. (2024) “Generalization and Robustness of the Tilted Empirical Risk.”

Zhang, R. and Reinert, G. (2024) “Simulating weak attacks in a new duplication–divergence model with node loss”, Entropy, 26(10).

Raybould, M. et al. (2024) “The observed T cell receptor space database enables paired-chain repertoire mining, coherence analysis and language modelling”, Cell Reports, 43(9).

Fischer, K. et al. (2024) “Rapid discovery of monoclonal antibodies by microfluidics-enabled FACS of single pathogen-specific antibody-secreting cells”, Nature Biotechnology, 43(6), pp. 960–970.