Publications by Computational Biology and Bioinformatics

Quast, N., Deane, C. and Raybould, M. (2025) “STCRpy: a software suite for T-cell receptor structure parsing, interaction profiling, and machine learning dataset preparation”, Bioinformatics, 41(10), p. btaf566.

Parag, K. et al. (2025) “Asymmetric limits on timely interventions from noisy epidemic data”, Communications Physics [Preprint].

Aminian, G. et al. (2025) “Generalization and robustness of the tilted empirical risk”, in Proceedings of the 42nd International Conference on Machine Learning. PMLR, pp. 1419–1461.

Dawkins, M. et al. (2025) “The benefits of smart farming: broiler chicken welfare is indicated earlier and more accurately with automated measurements of flock behaviour”, Smart Agricultural Technology, pp. 101500–101500.

Steyn, N. et al. (2025) “A decision-theoretic framework for uncertainty quantification in epidemiological modelling”, arXiv.

Steyn, N. et al. (2025) “A Bayesian model for repeated cross-sectional epidemic prevalence survey data”, PLoS Computational Biology [Preprint].

Capel, H. et al. (2025) “Pox-AbDab: the Orthopoxvirus Antibody Database”, bioRxiv.

Steyn, N. et al. (2025) “A Primer on Inference and Prediction With Epidemic Renewal Models and Sequential Monte Carlo”, Statistics in Medicine, 44(18-19).

Ignatieva, A. et al. (2025) “The length of haplotype blocks and signals of structural variation in reconstructed genealogies”, Molecular Biology and Evolution, p. msaf190.

Temcinas, T., Nanda, V. and Reinert, G. (2025) “Goodness-of-fit via count statistics in dense random simplicial complexes”, Foundations of Data Science [Preprint].