Publications by Computational Biology and Bioinformatics

Aminian, G. et al. (2025) “Generalization and robustness of the tilted empirical risk”, in Proceedings of the 42nd International Conference on Machine Learning. PMLR, pp. 1419–1461.

Quast, N., Deane, C. and Raybould, M. (2025) “STCRpy: a software suite for T cell receptor structure parsing, interaction profiling and machine learning dataset preparation.”, Bioinformatics (Oxford, England), p. btaf566.

Capel, H. et al. (2025) “Pox-AbDab: the Orthopoxvirus Antibody Database”, bioRxiv.

Ignatieva, A. et al. (2025) “The length of haplotype blocks and signals of structural variation in reconstructed genealogies”, Molecular Biology and Evolution, p. msaf190.

Temcinas, T., Nanda, V. and Reinert, G. (2025) “Goodness-of-fit via count statistics in dense random simplicial complexes”, Foundations of Data Science [Preprint].

Hutchings, C. et al. (2025) “An updated Bioconductor workflow for correlation profiling subcellular proteomics”, F1000Research, 14, p. 714.

Vandenbulcke, S. et al. (2025) “msqrob2TMT: Robust Linear Mixed Models for Inferring Differential Abundant Proteins in Labeled Experiments With Arbitrarily Complex Design”, Molecular & Cellular Proteomics, 24(7), p. 101002.

Fatima, A. and Reinert, G. (2025) “Stein’s method for distributions modelling competing and complementary risk problems”, Advances in Applied Probability [Preprint].

Crook, O. (2025) “Structure guided significance testing correction for hydrogen deuterium exchange mass spectrometry”, bioRxiv.

Reinert, G., Hung, E. and Mantziou, A. (2025) “A Bayesian mixture model for Poisson network autoregression”, Social Network Analysis and Mining [Preprint].