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Publications by Computational Biology and Bioinformatics

Bhatia, S. et al. (2023) “Retrospective evaluation of real-time estimates of global COVID-19 transmission trends and mortality forecasts”, PLoS ONE, 18(10).
Cooper, B. et al. (2023) “The burden and dynamics of hospital-acquired SARS-CoV-2 in England”, Nature, 623, pp. 132–138.
Carrera Carrera, J. et al. (2023) “Real-time RT-PCR for Venezuelan equine encephalitis complex, Madariaga and Eastern equine encephalitis viruses: application in human and mosquito public health surveillance in Panama”, Journal of Clinical Microbiology [Preprint].
Ward, H. et al. (2023) “Design and implementation of a national program to monitor the prevalence of SARS-CoV-2 IgG antibodies in England using self-testing: the REACT-2 study”, American Journal of Public Health, 113(11), pp. 1201–1209.
He, Y. et al. (2023) “Robust Angular Synchronization via Directed Graph Neural Networks”, arXiv.
Temčinas, T., Nanda, V. and Reinert, G. (2023) “Goodness-of-fit via Count Statistics in Dense Random Simplicial Complexes”, arXiv.
Yang, J. et al. (2023) “Determining herd immunity thresholds for hepatitis A virus transmission to inform vaccination strategies among people who inject drugs in 16 US states”, Clinical Infectious Diseases, 78(4), pp. 976–982.
Spoendlin, F. et al. (2023) “Improved computational epitope profiling using structural models identifies a broader diversity of antibodies that bind to the same epitope”, Frontiers in Molecular Biosciences, 10, pp. 1237621–1237621.
Vales, S. et al. (2023) “Discovery and pharmacophoric characterization of chemokine network inhibitors using phage-display, saturation mutagenesis and computational modelling”, Nature Communications, 14(1).
Klarner, L., Rudner, T. and Morris, G. (2023) “Drug discovery under covariate shift with domain-informed prior distributions over functions”, in Krause, A. et al. (eds.). Journal of Machine Learning Research, pp. 17176–17197.