Publications (Computational Biology and Bioinformatics) | Department of Statistics - University of Oxford

Publications by Computational Biology and Bioinformatics

Hayes, S. et al. (2024) “Ecology and environment predict spatially stratified risk of highly pathogenic avian influenza in wild birds across Europe”, bioRxiv.

McCabe, R. and Donnelly, C. (2023) “Public awareness of and opinions on the use of mathematical transmission modelling to inform public health policy in the United Kingdom”, Journal of the Royal Society Interface, 20.

Carrera, J.-P. et al. (2023) “Real-time RT-PCR for Venezuelan equine encephalitis complex, Madariaga, and Eastern equine encephalitis viruses: application in human and mosquito public health surveillance in Panama”, Journal of Clinical Microbiology, 61(12), pp. e00152 - e00123.

Buttenschoen, M., Morris, G. and Deane, C. (2023) “PoseBusters: AI-based docking methods fail to generate physically valid poses or generalise to novel sequences”, Chemical Science, 15(9), pp. 3130–3139.

Penn, M. et al. (2023) “Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees”, Genome Biology and Evolution, 15(12).

Hayman, E., Ignatieva, A. and Hein, J. (2023) “Recoverability of ancestral recombination graph topologies”, Theoretical Population Biology, 154, pp. 27–39.

Dablander, M. et al. (2023) “Exploring QSAR models for activity-cliff prediction.”, J. Cheminformatics, 15, pp. 47–47.

Penn, M. et al. (2023) “Sherlock - A flexible, low-resource tool for processing camera-trapping images”, Methods in Ecology and Evolution, 15(1), pp. 91–102.

Vicco, A. et al. (2023) “A simulation-based method to inform serosurvey designs for estimating the force of infection using existing blood samples”, PLoS Computational Biology, 19(11).

Abanades, B. et al. (2023) “The patent and literature antibody database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures”, Nucleic Acids Research [Preprint].