| homoData-class {annotate} | R Documentation |
A class to present data for HomologGene data of a matching sequence
Objects can be created by calls of the form new("homoData", ...).
homoOrg:"character" the
scientific name of the organism of interesthomoLL:"numeric" the LocusLink
id of the gene of interesthomoType:"character" the type of
similarity. Valid values include B - a recipiprocal best best
between 3 or more organisms, b - a reciprocal best match, and c -
a curated homology relationshiphomoPS:"numeric" percent
similarity valuehomoURL:"character" the URL for
curated homology relationshiphomoACC:"character" the
accession numberhomoHGID:"numeric" the
internal HomologGeneIDsignature(object = "homoData"): the get function for
slot homoPSsignature(object = "homoData"): the get function
for slot homoLLsignature(object = "homoData"): the get function
for slot homoOrgsignature(object = "homoData"): the get function
for slot homoTypesignature(object = "homoData"): the get function
for slot homoURLsignature(object = "homoData"): the get function
for slot homoACCsignature(object = "homoHGID"): the get
function for slot homoHGIDThis function is part of the Bioconductor project at Dana-Farber Cancer Institute to provide Bioinfomatics functionalities throug R
Jianhua Zhang
ftp://ftp.ncbi.nih.gov/pub/HomoloGene/README
new("homoData", homoPS = 82.3, homoLL = 2324853, homoOrg = "Homo sapins",
homoType = "B", homoURL = "", homoHGID = 12345)