* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/tinyarray.Rcheck’ * using R Under development (unstable) (2024-04-19 r86451) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘tinyarray/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘tinyarray’ version ‘2.3.3’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘tinyarray’ can be installed ... [57s/81s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [17s/43s] OK * checking whether the package can be loaded with stated dependencies ... [16s/22s] OK * checking whether the package can be unloaded cleanly ... [16s/24s] OK * checking whether the namespace can be loaded with stated dependencies ... [15s/24s] OK * checking whether the namespace can be unloaded cleanly ... [16s/18s] OK * checking loading without being on the library search path ... [16s/19s] OK * checking whether startup messages can be suppressed ... [14s/15s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [67s/68s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 2 marked UTF-8 strings * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [11s/12s] ERROR Running examples in ‘tinyarray-Ex.R’ failed The error most likely occurred in: > ### Name: corheatmap > ### Title: corheatmap > ### Aliases: corheatmap > > ### ** Examples > > x = rownames(exprSet_hub1)[1:3] > y = rownames(exprSet_hub1)[4:7] > corheatmap(exprSet_hub1,x,y) Error in loadNamespace(x) : there is no package called ‘Hmisc’ Calls: corheatmap ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-Suggests/tinyarray.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 8:31.15, 384.93 + 39.04