* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/survxai.Rcheck’ * using R Under development (unstable) (2022-02-22 r81797) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘survxai/DESCRIPTION’ ... OK * this is package ‘survxai’ version ‘0.2.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: ‘randomForestSRC’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘survxai’ can be installed ... [21s/49s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [27s/47s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [8s/12s] [9s/13s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(survxai) Loading required package: prodlim Welcome to survxai (version: 0.2.2). Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai > > test_check("survxai") [ FAIL 11 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error (test_explainer.R:3:1): (code run outside of `test_that()`) ─────────── Error in `library(randomForestSRC)`: there is no package called 'randomForestSRC' Backtrace: ▆ 1. ├─base::source("objects_for_tests.R") at test_explainer.R:3:0 2. │ ├─base::withVisible(eval(ei, envir)) 3. │ └─base::eval(ei, envir) 4. │ └─base::eval(ei, envir) 5. └─base::library(randomForestSRC) ── Error (test_plot_ceteris_paribus.R:3:1): (code run outside of `test_that()`) ── Error in `library(randomForestSRC)`: there is no package called 'randomForestSRC' Backtrace: ▆ 1. ├─base::source("objects_for_tests.R") at test_plot_ceteris_paribus.R:3:0 2. │ ├─base::withVisible(eval(ei, envir)) 3. │ └─base::eval(ei, envir) 4. │ └─base::eval(ei, envir) 5. └─base::library(randomForestSRC) ── Error (test_plot_explainer.R:3:1): (code run outside of `test_that()`) ────── Error in `library(randomForestSRC)`: there is no package called 'randomForestSRC' Backtrace: ▆ 1. ├─base::source("objects_for_tests.R") at test_plot_explainer.R:3:0 2. │ ├─base::withVisible(eval(ei, envir)) 3. │ └─base::eval(ei, envir) 4. │ └─base::eval(ei, envir) 5. └─base::library(randomForestSRC) ── Error (test_plot_model_performance.R:3:1): (code run outside of `test_that()`) ── Error in `library(randomForestSRC)`: there is no package called 'randomForestSRC' Backtrace: ▆ 1. ├─base::source("objects_for_tests.R") at test_plot_model_performance.R:3:0 2. │ ├─base::withVisible(eval(ei, envir)) 3. │ └─base::eval(ei, envir) 4. │ └─base::eval(ei, envir) 5. └─base::library(randomForestSRC) ── Error (test_plot_prediction_breakdown.R:3:1): (code run outside of `test_that()`) ── Error in `library(randomForestSRC)`: there is no package called 'randomForestSRC' Backtrace: ▆ 1. ├─base::source("objects_for_tests.R") at test_plot_prediction_breakdown.R:3:0 2. │ ├─base::withVisible(eval(ei, envir)) 3. │ └─base::eval(ei, envir) 4. │ └─base::eval(ei, envir) 5. └─base::library(randomForestSRC) ── Error (test_plot_variable_response.R:3:1): (code run outside of `test_that()`) ── Error in `library(randomForestSRC)`: there is no package called 'randomForestSRC' Backtrace: ▆ 1. ├─base::source("objects_for_tests.R") at test_plot_variable_response.R:3:0 2. │ ├─base::withVisible(eval(ei, envir)) 3. │ └─base::eval(ei, envir) 4. │ └─base::eval(ei, envir) 5. └─base::library(randomForestSRC) ── Error (test_prints.R:3:1): (code run outside of `test_that()`) ────────────── Error in `library(randomForestSRC)`: there is no package called 'randomForestSRC' Backtrace: ▆ 1. ├─base::source("objects_for_tests.R") at test_prints.R:3:0 2. │ ├─base::withVisible(eval(ei, envir)) 3. │ └─base::eval(ei, envir) 4. │ └─base::eval(ei, envir) 5. └─base::library(randomForestSRC) ── Error (test_surv_ceteris_paribus.R:3:1): (code run outside of `test_that()`) ── Error in `library(randomForestSRC)`: there is no package called 'randomForestSRC' Backtrace: ▆ 1. ├─base::source("objects_for_tests.R") at test_surv_ceteris_paribus.R:3:0 2. │ ├─base::withVisible(eval(ei, envir)) 3. │ └─base::eval(ei, envir) 4. │ └─base::eval(ei, envir) 5. └─base::library(randomForestSRC) ── Error (test_surv_model_performance.R:3:1): (code run outside of `test_that()`) ── Error in `library(randomForestSRC)`: there is no package called 'randomForestSRC' Backtrace: ▆ 1. ├─base::source("objects_for_tests.R") at test_surv_model_performance.R:3:0 2. │ ├─base::withVisible(eval(ei, envir)) 3. │ └─base::eval(ei, envir) 4. │ └─base::eval(ei, envir) 5. └─base::library(randomForestSRC) ── Error (test_surv_prediction_breakdown.R:3:1): (code run outside of `test_that()`) ── Error in `library(randomForestSRC)`: there is no package called 'randomForestSRC' Backtrace: ▆ 1. ├─base::source("objects_for_tests.R") at test_surv_prediction_breakdown.R:3:0 2. │ ├─base::withVisible(eval(ei, envir)) 3. │ └─base::eval(ei, envir) 4. │ └─base::eval(ei, envir) 5. └─base::library(randomForestSRC) ── Error (test_surv_variable_response.R:3:1): (code run outside of `test_that()`) ── Error in `library(randomForestSRC)`: there is no package called 'randomForestSRC' Backtrace: ▆ 1. ├─base::source("objects_for_tests.R") at test_surv_variable_response.R:3:0 2. │ ├─base::withVisible(eval(ei, envir)) 3. │ └─base::eval(ei, envir) 4. │ └─base::eval(ei, envir) 5. └─base::library(randomForestSRC) [ FAIL 11 | WARN 0 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: --- re-building ‘Custom_predict_for_survival_models.Rmd’ using knitr Quitting from lines 27-31 (Custom_predict_for_survival_models.Rmd) Error: processing vignette 'Custom_predict_for_survival_models.Rmd' failed with diagnostics: there is no package called 'randomForestSRC' --- failed re-building ‘Custom_predict_for_survival_models.Rmd’ --- re-building ‘Global_explanations.Rmd’ using knitr Quitting from lines 36-40 (Global_explanations.Rmd) Error: processing vignette 'Global_explanations.Rmd' failed with diagnostics: there is no package called 'randomForestSRC' --- failed re-building ‘Global_explanations.Rmd’ --- re-building ‘How_to_compare_models_with_survxai.Rmd’ using knitr Quitting from lines 40-46 (How_to_compare_models_with_survxai.Rmd) Error: processing vignette 'How_to_compare_models_with_survxai.Rmd' failed with diagnostics: there is no package called 'randomForestSRC' --- failed re-building ‘How_to_compare_models_with_survxai.Rmd’ --- re-building ‘Local_explanations.Rmd’ using knitr Quitting from lines 36-40 (Local_explanations.Rmd) Error: processing vignette 'Local_explanations.Rmd' failed with diagnostics: there is no package called 'randomForestSRC' --- failed re-building ‘Local_explanations.Rmd’ SUMMARY: processing the following files failed: ‘Custom_predict_for_survival_models.Rmd’ ‘Global_explanations.Rmd’ ‘How_to_compare_models_with_survxai.Rmd’ ‘Local_explanations.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs, 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-Suggests/survxai.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 5:16.72, 160.09 + 14.42