* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/singleCellHaystack.Rcheck’
* using R Under development (unstable) (2024-04-19 r86451)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘singleCellHaystack/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘singleCellHaystack’ version ‘1.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘singleCellHaystack’ can be installed ... [20s/23s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [30s/35s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [32s/43s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [31s/40s]
 [32s/40s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(singleCellHaystack)
  > 
  > test_check("singleCellHaystack")
  [ FAIL 5 | WARN 0 | SKIP 0 | PASS 33 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-haystack_continuous.R:17:3'): haystack continuous highD works ──
  x$results["gene_24", "log.p.vals"] not equal to -25.7761.
  1/1 mismatches
  [1] -25.8 - -25.8 == -0.0012
  ── Failure ('test-haystack_continuous.R:31:3'): haystack continuous highD works ──
  x$results["gene_24", "log.p.vals"] not equal to -20.65827.
  1/1 mismatches
  [1] -20.6 - -20.7 == 0.0262
  ── Failure ('test-haystack_sparse.R:21:3'): haystack works ─────────────────────
  x$results["gene_1", "log.p.vals"] not equal to -0.4574128.
  1/1 mismatches
  [1] -0.455 - -0.457 == 0.00216
  ── Failure ('test-haystack_sparse.R:36:3'): haystack works ─────────────────────
  x$results["gene_1", "D_KL"] not equal to 0.2716761.
  1/1 mismatches
  [1] 0.281 - 0.272 == 0.00979
  ── Failure ('test-haystack_sparse.R:37:3'): haystack works ─────────────────────
  x$results["gene_1", "log.p.vals"] not equal to -0.4350106.
  1/1 mismatches
  [1] -0.47 - -0.435 == -0.0346
  
  [ FAIL 5 | WARN 0 | SKIP 0 | PASS 33 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [8s/12s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/singleCellHaystack.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 4:54.20, 202.37 + 29.25