* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/shipunov.Rcheck’
* using R Under development (unstable) (2025-11-27 r89071)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘shipunov/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘shipunov’ version ‘1.17.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘shipunov’ can be installed ... [13s/30s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [28s/48s] OK
* checking Rd files ... NOTE
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
checkRd: (-1) classifs.Rd:28: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:55: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:67: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:84: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:98: height/width attributes should be in pixels
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [9s/16s] ERROR
Running examples in ‘shipunov-Ex.R’ failed
The error most likely occurred in:

> ### Name: Biarrows
> ### Title: Adds correlation arrows to the scatterplot
> ### Aliases: Biarrows
> ### Keywords: aplot
> 
> ### ** Examples
> 
> 
> iris.cmd <- cmdscale(dist(iris[, -5]))
> plot(iris.cmd, xlab="Dim 1", ylab="Dim 2")
> Biarrows(iris.cmd, iris[, -5])
> title(main="MDS biplot with Biarrows()")
> 
> ## ===
> 
> library(MASS)
Error in library(MASS) : there is no package called ‘MASS’
Execution halted
* checking PDF version of manual ... [15s/23s] OK
* checking HTML version of manual ... [16s/23s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/shipunov.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:22.13, 105.76 + 8.21