* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/sdglinkage.Rcheck’ * using R Under development (unstable) (2021-07-28 r80671) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘sdglinkage/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘sdglinkage’ version ‘0.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘sdglinkage’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [11s/11s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... ERROR Running examples in ‘sdglinkage-Ex.R’ failed The error most likely occurred in: > ### Name: compare_sdg > ### Title: Compare the performance of generators. > ### Aliases: compare_sdg > > ### ** Examples > > library(mlr) Error in library(mlr) : there is no package called ‘mlr’ Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [156s/157s] WARNING Error(s) in re-building vignettes: --- re-building ‘From_Sensitive_Real_Identifiers_to_Synthetic_Identifiers.Rmd’ using rmarkdown Quitting from lines 199-208 (From_Sensitive_Real_Identifiers_to_Synthetic_Identifiers.Rmd) Error: processing vignette 'From_Sensitive_Real_Identifiers_to_Synthetic_Identifiers.Rmd' failed with diagnostics: there is no package called 'reclin' --- failed re-building ‘From_Sensitive_Real_Identifiers_to_Synthetic_Identifiers.Rmd’ --- re-building ‘Generation_of_Gold_Standard_File_and_Linkage_Files.Rmd’ using rmarkdown Quitting from lines 164-173 (Generation_of_Gold_Standard_File_and_Linkage_Files.Rmd) Error: processing vignette 'Generation_of_Gold_Standard_File_and_Linkage_Files.Rmd' failed with diagnostics: there is no package called 'reclin' --- failed re-building ‘Generation_of_Gold_Standard_File_and_Linkage_Files.Rmd’ --- re-building ‘Synthetic_Data_Generation_and_Evaluation.Rmd’ using rmarkdown Quitting from lines 73-74 (Synthetic_Data_Generation_and_Evaluation.Rmd) Error: processing vignette 'Synthetic_Data_Generation_and_Evaluation.Rmd' failed with diagnostics: there is no package called 'webshot' --- failed re-building ‘Synthetic_Data_Generation_and_Evaluation.Rmd’ --- re-building ‘sdglinkage_README.Rmd’ using rmarkdown --- finished re-building ‘sdglinkage_README.Rmd’ SUMMARY: processing the following files failed: ‘From_Sensitive_Real_Identifiers_to_Synthetic_Identifiers.Rmd’ ‘Generation_of_Gold_Standard_File_and_Linkage_Files.Rmd’ ‘Synthetic_Data_Generation_and_Evaluation.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING See ‘/data/gannet/ripley/R/packages/tests-Suggests/sdglinkage.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 3:28.54, 201.67 + 5.15