* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/psych.Rcheck’
* using R Under development (unstable) (2024-04-19 r86451)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘psych/DESCRIPTION’ ... OK
* this is package ‘psych’ version ‘2.4.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘psych’ can be installed ... [97s/132s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [260s/344s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘psych-Ex.R’ failed
The error most likely occurred in:

> ### Name: ICC
> ### Title: Intraclass Correlations (ICC1, ICC2, ICC3 from Shrout and
> ###   Fleiss)
> ### Aliases: ICC
> ### Keywords: multivariate
> 
> ### ** Examples
> 
> sf <- matrix(c(
+ 9,    2,   5,    8,
+ 6,    1,   3,    2,
+ 8,    4,   6,    8,
+ 7,    1,   2,    6,
+ 10,   5,   6,    9,
+ 6,   2,   4,    7),ncol=4,byrow=TRUE)
> colnames(sf) <- paste("J",1:4,sep="")
> rownames(sf) <- paste("S",1:6,sep="")
> sf  #example from Shrout and Fleiss (1979)
   J1 J2 J3 J4
S1  9  2  5  8
S2  6  1  3  2
S3  8  4  6  8
S4  7  1  2  6
S5 10  5  6  9
S6  6  2  4  7
> ICC(sf,lmer=FALSE)  #just use the aov procedure
Call: ICC(x = sf, lmer = FALSE)

Intraclass correlation coefficients 
                         type  ICC    F df1 df2       p lower bound upper bound
Single_raters_absolute   ICC1 0.17  1.8   5  18 0.16477      -0.133        0.72
Single_random_raters     ICC2 0.29 11.0   5  15 0.00013       0.019        0.76
Single_fixed_raters      ICC3 0.71 11.0   5  15 0.00013       0.342        0.95
Average_raters_absolute ICC1k 0.44  1.8   5  18 0.16477      -0.884        0.91
Average_random_raters   ICC2k 0.62 11.0   5  15 0.00013       0.071        0.93
Average_fixed_raters    ICC3k 0.91 11.0   5  15 0.00013       0.676        0.99

 Number of subjects = 6     Number of Judges =  4
See the help file for a discussion of the other 4 McGraw and Wong estimates,>    
> #data(sai)
> sai <- psychTools::sai
Error in loadNamespace(x) : there is no package called ‘psychTools’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘scoring.Rnw’ using knitr

Quitting from lines  at lines 170-172 [unnamed-chunk-1] (scoring.Rnw)
Error: processing vignette 'scoring.Rnw' failed with diagnostics:
there is no package called 'psychTools'
--- failed re-building ‘scoring.Rnw’

SUMMARY: processing the following file failed:
  ‘scoring.Rnw’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [42s/54s] OK
* checking HTML version of manual ... [24s/33s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/psych.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 11:17.86, 499.63 + 15.86