* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/proftools.Rcheck’ * using R Under development (unstable) (2024-08-23 r87043) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘proftools/DESCRIPTION’ ... OK * this is package ‘proftools’ version ‘0.99-3’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘proftools’ can be installed ... [7s/12s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [18s/23s] OK * checking Rd files ... NOTE checkRd: (-1) proftools-package.Rd:40: Lost braces 40 | by the code{kcachegrind} program available on some operating | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [10s/17s] ERROR Running examples in ‘proftools-Ex.R’ failed The error most likely occurred in: > ### Name: filterProfileData > ### Title: Filter Profile Data > ### Aliases: filterProfileData > ### Keywords: programming utilities > > ### ** Examples > > pd <- readProfileData(system.file("samples", "glmEx.out", package="proftools")) > plotProfileCallGraph(pd) Error in loadNamespace(x) : there is no package called ‘graph’ Calls: plotProfileCallGraph ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: --- re-building ‘proftools.Rnw’ using knitr Quitting from lines 125-126 [unnamed-chunk-4] (proftools.Rnw) Error: processing vignette 'proftools.Rnw' failed with diagnostics: there is no package called 'boot' --- failed re-building ‘proftools.Rnw’ SUMMARY: processing the following file failed: ‘proftools.Rnw’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [8s/13s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs, 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-Suggests/proftools.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 1:42.56, 61.70 + 7.91