* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/pdp.Rcheck’
* using R Under development (unstable) (2025-12-11 r89139)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘pdp/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pdp’ version ‘0.8.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘vip’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pdp’ can be installed ... [13s/16s] OK
* used C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
* used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s/21s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘tinytest.R’
 ERROR
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > # Run tests in local environment
  > if (requireNamespace("tinytest", quietly = TRUE)) {
  +   home <- length(unclass(packageVersion("pdp"))[[1]]) == 4
  +   tinytest::test_package("pdp", at_home = home)
  + }
  
  test_cats_argument.R..........    0 tests    
  test_cats_argument.R..........    0 tests    
  test_cats_argument.R..........    0 tests    
  test_cats_argument.R..........    0 tests    
  test_cats_argument.R..........    0 tests    
  test_cats_argument.R..........    0 tests    
  test_cats_argument.R..........    0 tests    
  test_cats_argument.R..........    0 tests    
  test_cats_argument.R..........    0 tests    
  test_cats_argument.R..........    0 tests    0.4s
  
  test_exemplar.R...............    0 tests    
  test_exemplar.R...............    0 tests    
  test_exemplar.R...............    0 tests    
  test_exemplar.R...............    1 tests OK 47ms
  
  test_get_training_data.R......    0 tests    
  test_get_training_data.R......    0 tests    
  test_get_training_data.R......    0 tests    
  test_get_training_data.R......    0 tests    
  test_get_training_data.R......    0 tests    20ms
  
  test_pkg_C50.R................    0 tests    
  test_pkg_C50.R................    0 tests    6ms
  
  test_pkg_MASS.R...............    0 tests    6ms [Exited at #6: Package gridExtra missing]
  
  test_pkg_e1071.R..............    0 tests    7ms [Exited at #12: Package e1071 missing]
  
  test_pkg_party.R..............    0 tests    7ms
  
  test_pkg_ranger.R.............    0 tests    
  test_pkg_ranger.R.............    0 tests    
  test_pkg_ranger.R.............    0 tests    7ms
  
  test_pkg_stats.R..............    0 tests    11ms
  Error in library(Matrix) : there is no package called 'Matrix'
  Calls: <Anonymous> ... run_test_dir -> lapply -> FUN -> eval -> eval -> library
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [13s/17s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/pdp.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:46.32, 115.40 + 15.62