* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/metR.Rcheck’
* using R Under development (unstable) (2025-05-02 r88186)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-15 (GCC) 15.1.0
    GNU Fortran (GCC) 15.1.0
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘metR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘metR’ version ‘0.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘PCICt’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘metR’ can be installed ... [24s/25s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [34s/35s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘metR-Ex.R’ failed
The error most likely occurred in:

> ### Name: ConvertLongitude
> ### Title: Converts between longitude conventions
> ### Aliases: ConvertLongitude
> 
> ### ** Examples
> 
> library(ggplot2)
> library(data.table)
> ## Don't show: 
> data.table::setDTthreads(1)
> ## End(Don't show)
> data(geopotential)
> 
> ggplot(geopotential[date == date[1]], aes(lon, lat, z = gh)) +
+     geom_contour(color = "black") +
+     geom_contour(aes(x = ConvertLongitude(lon)))
> 
> map <- setDT(map_data("world"))
Error in map_data("world") : 
  The package "maps" is required for `map_data()`.
Calls: setDT -> is.data.table -> map_data -> check_installed
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [48s/45s]
 [48s/46s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(metR)
  > # library(vdiffr)
  > 
  > on_cran <- !isTRUE(as.logical(Sys.getenv("NOT_CRAN", "false")))
  > if (on_cran) data.table::setDTthreads(2)
  > 
  > test_check("metR")
  [ FAIL 23 | WARN 0 | SKIP 2 | PASS 151 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • On CRAN (2): 'test-GetTopography.R:3:5', 'test-ReadNetCDF.R:66:5'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-ReadNetCDF.R:6:5'): returns a data.table ───────────────────────
  Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages ncdf4, PCICt. Install them with: 'install.packages(c("ncdf4", "PCICt"))'.
  Backtrace:
      ▆
   1. ├─testthat::expect_s3_class(ReadNetCDF(file), "data.table") at test-ReadNetCDF.R:6:5
   2. │ └─testthat::quasi_label(enquo(object), arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─metR::ReadNetCDF(file)
   5.   └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")
   6.     └─metR:::stopf(...)
  ── Error ('test-ReadNetCDF.R:11:5'): GlanceNetCDF prints nicely ────────────────
  Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages ncdf4, PCICt. Install them with: 'install.packages(c("ncdf4", "PCICt"))'.
  Backtrace:
       ▆
    1. ├─testthat::expect_known_output(print(GlanceNetCDF(file)), "GlanceNetCDF") at test-ReadNetCDF.R:11:5
    2. │ ├─base::append(act, eval_with_output(object, print = print, width = width))
    3. │ └─testthat:::eval_with_output(object, print = print, width = width)
    4. │   ├─withr::with_output_sink(path, withVisible(code))
    5. │   │ └─base::force(code)
    6. │   └─base::withVisible(code)
    7. ├─base::print(GlanceNetCDF(file))
    8. └─metR::GlanceNetCDF(file)
    9.   └─metR::ReadNetCDF(file, out = "vars")
   10.     └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")
   11.       └─metR:::stopf(...)
  ── Error ('test-ReadNetCDF.R:16:5'): subsetting works ──────────────────────────
  Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages ncdf4, PCICt. Install them with: 'install.packages(c("ncdf4", "PCICt"))'.
  Backtrace:
      ▆
   1. └─metR::ReadNetCDF(file, subset = list(lat = -90:20)) at test-ReadNetCDF.R:16:5
   2.   └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")
   3.     └─metR:::stopf(...)
  ── Error ('test-ReadNetCDF.R:32:9'): naming works ──────────────────────────────
  Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages ncdf4, PCICt. Install them with: 'install.packages(c("ncdf4", "PCICt"))'.
  Backtrace:
      ▆
   1. ├─testthat::expect_true(...) at test-ReadNetCDF.R:31:5
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─metR::ReadNetCDF(file, vars = c(air2 = "air")) at test-ReadNetCDF.R:32:9
   5.   └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")
   6.     └─metR:::stopf(...)
  ── Error ('test-ReadNetCDF.R:38:5'): different outs work ───────────────────────
  Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages ncdf4, PCICt. Install them with: 'install.packages(c("ncdf4", "PCICt"))'.
  Backtrace:
      ▆
   1. ├─testthat::expect_s3_class(ReadNetCDF(file), "data.table") at test-ReadNetCDF.R:38:5
   2. │ └─testthat::quasi_label(enquo(object), arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─metR::ReadNetCDF(file)
   5.   └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")
   6.     └─metR:::stopf(...)
  ── Error ('test-ReadNetCDF.R:47:5'): time dimension without 'since' works ──────
  Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages ncdf4, PCICt. Install them with: 'install.packages(c("ncdf4", "PCICt"))'.
  Backtrace:
      ▆
   1. └─metR::ReadNetCDF(file) at test-ReadNetCDF.R:47:5
   2.   └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")
   3.     └─metR:::stopf(...)
  ── Error ('test-ReadNetCDF.R:53:5'): can parse calendar correcly ───────────────
  Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages ncdf4, PCICt. Install them with: 'install.packages(c("ncdf4", "PCICt"))'.
  Backtrace:
      ▆
   1. └─metR::ReadNetCDF(file, vars = "zg") at test-ReadNetCDF.R:53:5
   2.   └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")
   3.     └─metR:::stopf(...)
  ── Error ('test-ReadNetCDF.R:59:5'): can read from nc_open ─────────────────────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'ncdf4'
  Backtrace:
      ▆
   1. └─base::loadNamespace(x) at test-ReadNetCDF.R:59:5
   2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   3.     └─base (local) withOneRestart(expr, restarts[[1L]])
   4.       └─base (local) doWithOneRestart(return(expr), restart)
  ── Error ('test-ReadNetCDF.R:76:5'): can read variables with no dimension ──────
  Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages ncdf4, PCICt. Install them with: 'install.packages(c("ncdf4", "PCICt"))'.
  Backtrace:
      ▆
   1. ├─testthat::expect_equal(ReadNetCDF(file, "projection"), 1) at test-ReadNetCDF.R:76:5
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─metR::ReadNetCDF(file, "projection")
   5.   └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")
   6.     └─metR:::stopf(...)
  ── Error ('test-ReadNetCDF.R:82:5'): function in vars works ────────────────────
  Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages ncdf4, PCICt. Install them with: 'install.packages(c("ncdf4", "PCICt"))'.
  Backtrace:
      ▆
   1. └─metR::ReadNetCDF(file, vars = "o3_conc") at test-ReadNetCDF.R:82:5
   2.   └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")
   3.     └─metR:::stopf(...)
  ── Error ('test-Smooth2D.R:2:1'): (code run outside of `test_that()`) ──────────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'reshape2'
  Backtrace:
      ▆
   1. └─base::loadNamespace(x) at test-Smooth2D.R:2:1
   2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   3.     └─base (local) withOneRestart(expr, restarts[[1L]])
   4.       └─base (local) doWithOneRestart(return(expr), restart)
  ── Failure ('test-eof.R:27:5'): can use differnet engine ───────────────────────
  ...[] not equal to EOF(gh ~ lat + lon | date, data = geopotential, n = 1)$left.
  Column 'gh': Mean relative difference: 2
  ── Error ('test-vis-arrow.R:1:1'): (code run outside of `test_that()`) ─────────
  <packageNotFoundError/error/condition>
  Error in `library(vdiffr)`: there is no package called 'vdiffr'
  Backtrace:
      ▆
   1. └─base::library(vdiffr) at test-vis-arrow.R:1:1
  ── Error ('test-vis-contour2.R:1:1'): (code run outside of `test_that()`) ──────
  <packageNotFoundError/error/condition>
  Error in `library(vdiffr)`: there is no package called 'vdiffr'
  Backtrace:
      ▆
   1. └─base::library(vdiffr) at test-vis-contour2.R:1:1
  ── Error ('test-vis-contour_fill.R:1:1'): (code run outside of `test_that()`) ──
  <packageNotFoundError/error/condition>
  Error in `library(vdiffr)`: there is no package called 'vdiffr'
  Backtrace:
      ▆
   1. └─base::library(vdiffr) at test-vis-contour_fill.R:1:1
  ── Error ('test-vis-discretised-scale.R:2:1'): (code run outside of `test_that()`) ──
  <packageNotFoundError/error/condition>
  Error in `library(vdiffr)`: there is no package called 'vdiffr'
  Backtrace:
      ▆
   1. └─base::library(vdiffr) at test-vis-discretised-scale.R:2:1
  ── Error ('test-vis-geom-relief.R:1:1'): (code run outside of `test_that()`) ───
  <packageNotFoundError/error/condition>
  Error in `library(vdiffr)`: there is no package called 'vdiffr'
  Backtrace:
      ▆
   1. └─base::library(vdiffr) at test-vis-geom-relief.R:1:1
  ── Error ('test-vis-guide_colorstrip.R:1:1'): (code run outside of `test_that()`) ──
  <packageNotFoundError/error/condition>
  Error in `library(vdiffr)`: there is no package called 'vdiffr'
  Backtrace:
      ▆
   1. └─base::library(vdiffr) at test-vis-guide_colorstrip.R:1:1
  ── Error ('test-vis-streamline.R:3:1'): (code run outside of `test_that()`) ────
  <packageNotFoundError/error/condition>
  Error in `library(vdiffr)`: there is no package called 'vdiffr'
  Backtrace:
      ▆
   1. └─base::library(vdiffr) at test-vis-streamline.R:3:1
  ── Error ('test-vis-text-contour.R:2:1'): (code run outside of `test_that()`) ──
  <packageNotFoundError/error/condition>
  Error in `library(vdiffr)`: there is no package called 'vdiffr'
  Backtrace:
      ▆
   1. └─base::library(vdiffr) at test-vis-text-contour.R:2:1
  ── Error ('tests.R:20:5'): Water is still water ────────────────────────────────
  Error in `check_packages(c("maps"), "MaskLand")`: MaskLand needs packages maps. Install them with: 'install.packages(c("maps"))'.
  Backtrace:
      ▆
   1. ├─testthat::expect_equal(MaskLand(120, 14), FALSE) at tests.R:20:5
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─metR::MaskLand(120, 14)
   5.   └─metR:::check_packages(c("maps"), "MaskLand")
   6.     └─metR:::stopf(...)
  ── Error ('tests.R:27:5'): MaskLand respects boundaries ────────────────────────
  Error in `check_packages(c("maps"), "MaskLand")`: MaskLand needs packages maps. Install them with: 'install.packages(c("maps"))'.
  Backtrace:
      ▆
   1. ├─testthat::expect_equal(MaskLand(361, 15), MaskLand(1, 15)) at tests.R:27:5
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─metR::MaskLand(361, 15)
   5.   └─metR:::check_packages(c("maps"), "MaskLand")
   6.     └─metR:::stopf(...)
  ── Error ('tests.R:33:5'): MaskLand respects order ─────────────────────────────
  Error in `check_packages(c("maps"), "MaskLand")`: MaskLand needs packages maps. Install them with: 'install.packages(c("maps"))'.
  Backtrace:
      ▆
   1. ├─testthat::expect_equal(...) at tests.R:33:5
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─metR::MaskLand(c(120, 360 - 58), c(14, -34))
   5.   └─metR:::check_packages(c("maps"), "MaskLand")
   6.     └─metR:::stopf(...)
  
  [ FAIL 23 | WARN 0 | SKIP 2 | PASS 151 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [13s/13s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/metR.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:29.90, 197.11 + 12.52