* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/lava.Rcheck’
* using R Under development (unstable) (2024-04-19 r86451)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘lava/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘lava’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘lava’ can be installed ... [64s/79s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [164s/226s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [21s/29s] ERROR
Running examples in ‘lava-Ex.R’ failed
The error most likely occurred in:

> ### Name: ksmooth2
> ### Title: Plot/estimate surface
> ### Aliases: ksmooth2 surface
> 
> ### ** Examples
> 
> ksmooth2(rmvn0(1e4,sigma=diag(2)*.5+.5),c(-3.5,3.5),h=1,
+         rgl=FALSE,theta=30)
Error in loadNamespace(x) : there is no package called ‘KernSmooth’
Calls: ksmooth2 ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’ [44s/57s]
 [45s/58s] ERROR
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > #library("lava")
  > suppressPackageStartupMessages(library("testthat"))
  > test_check("lava")
  Loading required package: lava
  
  Attaching package: 'lava'
  
  The following object is masked from 'package:testthat':
  
      compare
  
  [ FAIL 3 | WARN 2 | SKIP 0 | PASS 212 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-influence.R:9:3'): GEE ─────────────────────────────────────────
  Error in `geeglm(y ~ x, data = d0, id = d0$id)`: could not find function "geeglm"
  ── Error ('test-influence.R:25:3'): merge, IC, estimate with 'id' argument ─────
  Error in `geeglm(y ~ x, id = d$id0, data = d)`: could not find function "geeglm"
  Backtrace:
      ▆
   1. └─base::summary(geeglm(y ~ x, id = d$id0, data = d)) at test-influence.R:25:3
  ── Error ('test-influence.R:50:3'): negative binomial regression (glm.nb) ──────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'MASS'
  Backtrace:
      ▆
   1. └─base::loadNamespace(x) at test-influence.R:50:3
   2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   3.     └─base (local) withOneRestart(expr, restarts[[1L]])
   4.       └─base (local) doWithOneRestart(return(expr), restart)
  
  [ FAIL 3 | WARN 2 | SKIP 0 | PASS 212 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [15s/20s] OK
* checking HTML version of manual ... [8s/15s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/lava.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 9:29.55, 412.15 + 22.36