* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/interplex.Rcheck’ * using R Under development (unstable) (2023-01-20 r83646) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4) GNU Fortran (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4) * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘interplex/DESCRIPTION’ ... OK * this is package ‘interplex’ version ‘0.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: ‘TDA’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘interplex’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ERROR Running examples in ‘interplex-Ex.R’ failed The error most likely occurred in: > ### Name: as_cmplx > ### Title: Coerce objects to lists of simplices > ### Aliases: as_cmplx as_cmplx.default as_cmplx.Rcpp_SimplexTree > ### as_cmplx.gudhi.simplex_tree.SimplexTree as_cmplx.igraph > ### as_cmplx.network > > ### ** Examples > > # pick the simplicial complex from a TDA filtration object > t <- 2 * pi * c(0, 1, 3, 6) / 7 > rf <- TDA::ripsFiltration( + cbind(x = cos(t), y = sin(t)), + maxdimension = 2L, maxscale = 1.7 + ) Error in loadNamespace(x) : there is no package called ‘TDA’ Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted * checking PDF version of manual ... [7s/10s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-Suggests/interplex.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 1:02.26, 32.97 + 6.37