* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/ggmsa.Rcheck’
* using R Under development (unstable) (2021-08-02 r80698)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘ggmsa/DESCRIPTION’ ... OK
* this is package ‘ggmsa’ version ‘1.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘ggtreeExtra’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ggmsa’ can be installed ... [16s/16s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [20s/20s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘ggmsa-Ex.R’ failed
The error most likely occurred in:

> ### Name: facet_msa
> ### Title: segment MSA
> ### Aliases: facet_msa
> 
> ### ** Examples
> 
> library(ggplot2)
> f <- system.file("extdata/sample.fasta", package="ggmsa")
> # 2 fields
> ggmsa(f, end = 120, font = NULL, color="Chemistry_AA") + facet_msa(field = 60)
Error in loadNamespace(x) : there is no package called ‘seqmagick’
Calls: ggmsa ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... WARNING
Error(s) in re-building vignettes:
--- re-building ‘ggmsa.Rmd’ using rmarkdown
Quitting from lines 71-72 (ggmsa.Rmd) 
Error: processing vignette 'ggmsa.Rmd' failed with diagnostics:
there is no package called 'seqmagick'
--- failed re-building ‘ggmsa.Rmd’

SUMMARY: processing the following file failed:
  ‘ggmsa.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 1 WARNING, 1 NOTE
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/ggmsa.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:03.98, 114.26 + 9.24