* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/epiGWAS.Rcheck’
* using R Under development (unstable) (2022-01-11 r81470)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘epiGWAS/DESCRIPTION’ ... OK
* this is package ‘epiGWAS’ version ‘1.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘epiGWAS’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘epiGWAS-Ex.R’ failed
The error most likely occurred in:

> ### Name: modified_outcome
> ### Title: Implements the modified outcome approach
> ### Aliases: modified_outcome
> 
> ### ** Examples
> 
> n <- 30
> p <- 10
> X <- matrix((runif(n * p) < 0.5) + (runif(n * p) < 0.5), ncol = p, nrow = n)
> A <- (runif(n, min = 0, max = 1) < 0.3)
> propensity <- runif(n, min = 0.4, max = 0.8)
> Y <- runif(n) < 1/ (1 + exp(- 2 * X[, 5, drop = FALSE]))
> auc_scores <- modified_outcome(A, X, Y, propensity,
+                                ncores = 1, parallel = TRUE, n_subsample = 1)
Error in loadNamespace(x) : there is no package called ‘bigmemory’
Calls: modified_outcome ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [12s/12s]
 [12s/12s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(epiGWAS)
  > 
  > test_check("epiGWAS")
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test_methods.R:56:3): do.call is instructed for stabilityBIG ─────────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'bigmemory'
  Backtrace:
      █
   1. ├─testthat::expect_length(...) test_methods.R:56:2
   2. │ └─testthat::quasi_label(enquo(object), arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. ├─epiGWAS::modified_outcome(...)
   5. └─base::loadNamespace(x)
   6.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   7.     └─base:::withOneRestart(expr, restarts[[1L]])
   8.       └─base:::doWithOneRestart(return(expr), restart)
  ── Error (test_methods.R:88:3): jointly calling all methods is possible with epiGWAS ──
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'bigmemory'
  Backtrace:
      █
   1. ├─epiGWAS::epiGWAS(...) test_methods.R:88:2
   2. │ ├─base::do.call(m, args = method_args)
   3. │ └─epiGWAS::modified_outcome(...)
   4. └─base::loadNamespace(x)
   5.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   6.     └─base:::withOneRestart(expr, restarts[[1L]])
   7.       └─base:::doWithOneRestart(return(expr), restart)
  ── Error (test_stability.R:42:3): stabilityBIG correctly adapts to the length of the LASSO path ──
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'bigmemory'
  Backtrace:
      █
   1. └─base::loadNamespace(x) test_stability.R:42:2
   2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   3.     └─base:::withOneRestart(expr, restarts[[1L]])
   4.       └─base:::doWithOneRestart(return(expr), restart)
  ── Error (test_stability.R:64:3): stabilityBIG shortens the path if the model saturates ──
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'bigmemory'
  Backtrace:
      █
   1. └─base::loadNamespace(x) test_stability.R:64:2
   2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   3.     └─base:::withOneRestart(expr, restarts[[1L]])
   4.       └─base:::doWithOneRestart(return(expr), restart)
  
  [ FAIL 4 | WARN 4 | SKIP 0 | PASS 37 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/epiGWAS.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 0:36.19, 31.65 + 4.17