* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/autostats.Rcheck’ * using R Under development (unstable) (2023-08-14 r84945) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘autostats/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘autostats’ version ‘0.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: ‘moreparty’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘autostats’ can be installed ... [7s/125s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [11s/41s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE Documented arguments not in \usage in documentation object 'plot_varimp_xgboost': ‘font’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [11s/76s] ERROR Running examples in ‘autostats-Ex.R’ failed The error most likely occurred in: > ### Name: auto_variable_contributions > ### Title: Plot Variable Contributions > ### Aliases: auto_variable_contributions > > ### ** Examples > > > iris %>% + framecleaner::create_dummies() %>% + auto_variable_contributions( + tidy_formula(., target = Petal.Width) + ) 1 column(s) have become 3 dummy columns Error: Ckmeans.1d.dp package is required Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [13s/45s] ERROR Error(s) in re-building vignettes: --- re-building ‘autostats.Rmd’ using rmarkdown Quitting from lines 11-17 [unnamed-chunk-1] (autostats.Rmd) Error: processing vignette 'autostats.Rmd' failed with diagnostics: there is no package called 'broom.mixed' --- failed re-building ‘autostats.Rmd’ --- re-building ‘tidyXgboost.Rmd’ using rmarkdown Quitting from lines 104-107 [unnamed-chunk-6] (tidyXgboost.Rmd) Error: processing vignette 'tidyXgboost.Rmd' failed with diagnostics: Ckmeans.1d.dp package is required --- failed re-building ‘tidyXgboost.Rmd’ SUMMARY: processing the following files failed: ‘autostats.Rmd’ ‘tidyXgboost.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [8s/20s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs, 2 NOTEs See ‘/data/gannet/ripley/R/packages/tests-Suggests/autostats.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 7:29.64, 72.52 + 10.88