* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/SpaDES.core.Rcheck’
* using R Under development (unstable) (2022-02-01 r81620)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘SpaDES.core/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SpaDES.core’ version ‘1.0.10’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘SpaDES.tools’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SpaDES.core’ can be installed ... [45s/45s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [52s/52s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Unknown package ‘SpaDES.tools’ in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [12s/12s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’ [50s/51s]
 [51s/51s] ERROR
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  > test_check("SpaDES.core")
  Loading required package: SpaDES.core
  Loading required package: quickPlot
  Loading required package: reproducible
  
  Attaching package: 'SpaDES.core'
  
  The following objects are masked from 'package:stats':
  
      end, start
  
  The following object is masked from 'package:utils':
  
      citation
  
  [ FAIL 3 | WARN 26 | SKIP 38 | PASS 406 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • GLPK not available on Linux (1)
  • On CRAN (12)
  • RandomFields cannot be loaded (16)
  • SpaDES.tools cannot be loaded (1)
  • This memoryUse is still very experimental (1)
  • benchmarking DES (1)
  • empty test (4)
  • restartR not possible in automated tests (1)
  • restartR with logging not possible in automated tests (1)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure (test-Plots.R:83:7): Plots function 1 ───────────────────────────────
  any(grepl("qs", files) & !grepl("gg", files)) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure (test-Plots.R:83:7): Plots function 1 ───────────────────────────────
  any(grepl("qs", files) & !grepl("gg", files)) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure (test-Plots.R:83:7): Plots function 1 ───────────────────────────────
  any(grepl("qs", files) & !grepl("gg", files)) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 3 | WARN 26 | SKIP 38 | PASS 406 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/SpaDES.core.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 5:44.34, 326.01 + 16.81