* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/RVAideMemoire.Rcheck’ * using R Under development (unstable) (2024-04-19 r86451) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘RVAideMemoire/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RVAideMemoire’ version ‘0.9-83-7’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘glmmADMB’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RVAideMemoire’ can be installed ... [32s/44s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [78s/109s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [24s/34s] ERROR Running examples in ‘RVAideMemoire-Ex.R’ failed The error most likely occurred in: > ### Name: rating.emmeans > ### Title: EMMeans for Cumulative Link (Mixed) Models > ### Aliases: rating.emmeans > > ### ** Examples > > require(ordinal) Loading required package: ordinal Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘ordinal’ > require(emmeans) Loading required package: emmeans > > model <- clm(rating~contact*temp,data=wine) Error in clm(rating ~ contact * temp, data = wine) : could not find function "clm" Execution halted * checking PDF version of manual ... [20s/27s] OK * checking HTML version of manual ... [11s/20s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-Suggests/RVAideMemoire.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 4:52.29, 195.61 + 10.80