* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/PartialNetwork.Rcheck’
* using R Under development (unstable) (2025-11-06 r88990)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘PartialNetwork/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PartialNetwork’ version ‘1.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PartialNetwork’ can be installed ... [552s/134s] OK
* used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [22s/23s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘PartialNetwork-Ex.R’ failed
The error most likely occurred in:

> ### Name: mcmcSAR
> ### Title: Bayesian Estimator of SAR model
> ### Aliases: mcmcSAR
> 
> ### ** Examples
> 
> # We assume that the network is fully observed
> # See our vignette for examples where the network is partially observed
> # Number of groups
> M             <- 10
> # size of each group
> N             <- rep(20,M)
> # individual effects
> beta          <- c(2,1,1.5)
> # contextual effects
> gamma         <- c(5,-3)
> # endogenous effects
> alpha         <- 0.4
> # std-dev errors
> se            <- 1
> # prior distribution
> prior         <- runif(sum(N*(N-1)))
> prior         <- vec.to.mat(prior, N, normalise = FALSE)
> # covariates
> X             <- cbind(rnorm(sum(N),0,5),rpois(sum(N),7))
> # true network
> G0            <- sim.network(prior)
> # normalise
> G0norm        <- norm.network(G0)
> GX            <- peer.avg(G0norm, X)
> # simulate dependent variable use an external package
> y             <- CDatanet::simsar(~ X + GX, Glist = G0norm,
+                                   theta = c(alpha, beta, gamma, se))
Error in loadNamespace(x) : there is no package called ‘CDatanet’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/PartialNetwork.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:46.62, 599.49 + 40.20