* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/MPkn.Rcheck’ * using R Under development (unstable) (2022-05-26 r82405) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘MPkn/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MPkn’ version ‘0.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MPkn’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... ERROR Running examples in ‘MPkn-Ex.R’ failed The error most likely occurred in: > ### Name: MPkn-package > ### Title: Calculations of One Discrete Model in Several Time Steps > ### Aliases: MPkn-package > > ### ** Examples > > require(MPkn) > require(markovchain) Loading required package: markovchain Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘markovchain’ > options(digits = 14) > n = 12 > k = 2 > rz = 11 > P = array(0, c(rz, rz)) > for (i in 1:rz){ + po = runif(rz) + P[i, ] = po/sum(po) + } > I = diag(1, rz, rz) > Myy = MUPkL(P, P, I, n, k, c(1:rz)) > StSy = NULL > for (i in 1:rz) StSy = c(StSy, Myy$Navg[,,i][n]) > mrkv = new("markovchain", transitionMatrix = P) Error in getClass(Class, where = topenv(parent.frame())) : “markovchain” is not a defined class Calls: new -> getClass Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-Suggests/MPkn.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 0:45.79, 26.14 + 5.46