* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/InterpretMSSpectrum.Rcheck’
* using R Under development (unstable) (2024-04-19 r86451)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘InterpretMSSpectrum/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘InterpretMSSpectrum’ version ‘1.4.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘InterpretMSSpectrum’ can be installed ... [9s/13s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s/28s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [11s/18s]
 [11s/19s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(InterpretMSSpectrum)
  > 
  > test_check("InterpretMSSpectrum")
  
  The use of this function requires package 'Rdisop'.
  Please install with 'BiocManager::install("Rdisop")'
  
  
  The use of this function requires package 'Rdisop'.
  Please install with 'BiocManager::install("Rdisop")'
  
  
  The use of this function requires package 'Rdisop'.
  Please install with 'BiocManager::install("Rdisop")'
  
  
  The use of this function requires package 'Rdisop'.
  Please install with 'BiocManager::install("Rdisop")'
  
  
  The use of this function requires package 'Rdisop'.
  Please install with 'BiocManager::install("Rdisop")'
  
  
  The use of this function requires package 'Rdisop'.
  Please install with 'BiocManager::install("Rdisop")'
  
  
  The use of this function requires package 'Rdisop'.
  Please install with 'BiocManager::install("Rdisop")'
  
  [ FAIL 9 | WARN 0 | SKIP 0 | PASS 62 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-InterpretMSSpectrum.R:15:5'): InterpretMSSpectrum works ──────
  `out` has length 0, not length 10.
  ── Failure ('test-InterpretMSSpectrum.R:16:5'): InterpretMSSpectrum works ──────
  attr(out, "stats")[, "mz"] (`actual`) not equal to c(202.0893, 246.1339, 274.1288, 348.1477, 364.1789) (`expected`).
  
  `actual` is NULL
  `expected` is a double vector (202.0893, 246.1339, 274.1288, 348.1477, 364.1789)
  ── Failure ('test-InterpretMSSpectrum.R:23:5'): InterpretMSSpectrum works ──────
  `out` has length 0, not length 6.
  ── Failure ('test-InterpretTP.R:7:5'): InterpretTP returns expected result ─────
  is.list(out) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-InterpretTP.R:10:5'): InterpretTP returns expected result ────
  is.list(out) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-InterpretTP.R:12:5'): InterpretTP returns expected result ────
  is.list(out) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Error ('test-PlotSpec.R:7:5'): PlotSpec plot returns expected result for APCI ──
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'vdiffr'
  Backtrace:
      ▆
   1. └─base::loadNamespace(x) at test-PlotSpec.R:7:5
   2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   3.     └─base (local) withOneRestart(expr, restarts[[1L]])
   4.       └─base (local) doWithOneRestart(return(expr), restart)
  ── Error ('test-PlotSpec.R:22:5'): PlotSpec plot returns expected result for ESI ──
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'vdiffr'
  Backtrace:
      ▆
   1. └─base::loadNamespace(x) at test-PlotSpec.R:22:5
   2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   3.     └─base (local) withOneRestart(expr, restarts[[1L]])
   4.       └─base (local) doWithOneRestart(return(expr), restart)
  ── Error ('test-findMAIN.R:65:5'): findMAIN plot returns expected result ───────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'vdiffr'
  Backtrace:
      ▆
   1. └─base::loadNamespace(x) at test-findMAIN.R:65:5
   2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   3.     └─base (local) withOneRestart(expr, restarts[[1L]])
   4.       └─base (local) doWithOneRestart(return(expr), restart)
  
  [ FAIL 9 | WARN 0 | SKIP 0 | PASS 62 ]
  Deleting unused snapshots:
  • PlotSpec/plotspec-01.svg
  • PlotSpec/plotspec-02.svg
  • findMAIN/findmain-plot-01.svg
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [8s/12s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/InterpretMSSpectrum.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:00.53, 71.21 + 9.19