* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/EcoIndR.Rcheck’
* using R Under development (unstable) (2022-08-10 r82700)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘EcoIndR/DESCRIPTION’ ... OK
* this is package ‘EcoIndR’ version ‘1.8’
* package encoding: latin1
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EcoIndR’ can be installed ... [10s/12s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [18s/19s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... ERROR
Running examples in ‘EcoIndR-Ex.R’ failed
The error most likely occurred in:

> ### Name: DER
> ### Title: DIFFERENTIATING SAMPLES USING RARITY, HETEROGENEITY, EVENNESS,
> ###   TAXONOMIC, PHYLOGENETIC AND FUNCTIONAL DIVERSITY INDICES
> ### Aliases: DER
> ### Keywords: DER
> 
> ### ** Examples
> 
> 
> #An example without functional diversity
> 
> data(Rotifers)
> 
> DER(data=Rotifers, Samples=c("J1.1","K4.1","G3.1","F2.1","K2.2","F8.2","F8.1",
+ "F1.1","F4.1","J2.1","E5.1","H5.1","K3.2","E4.2","I6.1","K2.1","J5.1","I3.1",
+ "K3.3","G5.1","E6.1","J1.2","J6.1","G7.1","G6.1","G4.1","E3.1","E4.3","E2.1",
+ "H6.2","F7.1","J6.2"), Species="Species", Taxon=c("Class","Subclass",
+ "Superorder","Order","Family","Genus"), pos="Pos", Index=c("Rarity.G","Menhinick",
+ "McIntoshE", "Dstar"), save=FALSE)
Error in loadNamespace(x) : there is no package called ‘Rarity’
Calls: DER ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/EcoIndR.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:34.37, 80.88 + 8.78