* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/DeclareDesign.Rcheck’
* using R Under development (unstable) (2024-04-11 r86406)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘DeclareDesign/DESCRIPTION’ ... OK
* this is package ‘DeclareDesign’ version ‘1.0.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘margins’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DeclareDesign’ can be installed ... [10s/33s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/14s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/12s] OK
* checking whether the package can be unloaded cleanly ... [3s/12s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/11s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/11s] OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [31s/87s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [8s/22s] ERROR
Running examples in ‘DeclareDesign-Ex.R’ failed
The error most likely occurred in:

> ### Name: compare_functions
> ### Title: Compare two designs
> ### Aliases: compare_functions compare_designs compare_design_code
> ###   compare_design_summaries compare_design_data compare_design_estimates
> ###   compare_design_inquiries
> 
> ### ** Examples
> 
> 
> design1 <- declare_model(N = 100, u = rnorm(N), potential_outcomes(Y ~ Z + u)) +
+   declare_inquiry(ATE = mean(Y_Z_1 - Y_Z_0)) +
+   declare_sampling(S = complete_rs(N, n = 75)) +
+   declare_assignment(Z = complete_ra(N, m = 50)) +
+   declare_measurement(Y = reveal_outcomes(Y ~ Z)) +
+   declare_estimator(Y ~ Z, inquiry = "ATE")
> 
> design2 <- declare_model(N = 200, U = rnorm(N),
+                          potential_outcomes(Y ~ 0.5*Z + U)) +
+   declare_inquiry(ATE = mean(Y_Z_1 - Y_Z_0)) +
+   declare_sampling(S = complete_rs(N, n = 100)) +
+   declare_assignment(Z = complete_ra(N, m = 25)) +
+   declare_measurement(Y = reveal_outcomes(Y ~ Z)) +
+   declare_estimator(Y ~ Z, .method = lm_robust, inquiry = "ATE")
>  
>  compare_designs(design1, design2)
Loading required namespace: diffobj
Failed with error:  ‘there is no package called ‘diffobj’’
Error in fun(design1, design2, format = format, pager = pager, context = context,  : 
  requireNamespace("diffobj") is not TRUE
Calls: compare_designs -> lapply -> FUN -> fun -> stopifnot
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [125s/268s]
 [125s/269s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(DeclareDesign)
  Loading required package: randomizr
  Loading required package: fabricatr
  Loading required package: estimatr
  > 
  > test_check("DeclareDesign")
  Error : No estimates or inquiries were declared, so design cannot be simulated.
  Error : No estimates or inquiries were declared, so design cannot be simulated.
  Error : No estimates or inquiries were declared, so design cannot be simulated.
  Error : No estimates or inquiries were declared, so design cannot be simulated.
  [ FAIL 18 | WARN 0 | SKIP 13 | PASS 467 ]
  
  ══ Skipped tests (13) ══════════════════════════════════════════════════════════
  • AER cannot be loaded (1): 'test-noncompliance.R:4:3'
  • DesignLibrary cannot be loaded (3): 'test-design-library.R:5:3',
    'test-design-library.R:20:3', 'test-design-library.R:37:3'
  • Matching cannot be loaded (1): 'test-estimators.R:285:3'
  • On CRAN (1): 'test-reshape-diagnosis.R:122:3'
  • Skipped bootstrap SE test for speed (1): 'test-bootstrap-diagnosands.R:43:3'
  • coin cannot be loaded (1): 'test-test.R:5:3'
  • data.table cannot be loaded (1): 'test-alternative-df-compatibility.R:52:3'
  • dplyr cannot be loaded (1): 'test-alternative-df-compatibility.R:18:3'
  • future.apply cannot be loaded (1): 'test-diagnosands.R:59:3'
  • reshape2 cannot be loaded (1): 'test-diagnosands.R:176:3'
  • sf cannot be loaded (1): 'test-alternative-df-compatibility.R:68:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-allow-custom-functions.R:1:1'): (code run outside of `test_that()`) ──
  <packageNotFoundError/error/condition>
  Error in `library(dplyr)`: there is no package called 'dplyr'
  Backtrace:
      ▆
   1. └─base::library(dplyr) at test-allow-custom-functions.R:1:1
  ── Error ('test-declare-design.R:33:5'): test the full declare design setup ────
  Error: Error in step 4 ():
  	Error in loadNamespace(x): there is no package called 'dplyr'
  
  Backtrace:
      ▆
   1. └─DeclareDesign::draw_data(design) at test-declare-design.R:33:5
   2.   └─DeclareDesign:::get_function_internal(...)
   3.     └─DeclareDesign:::run_design_internal.design(...)
   4.       └─DeclareDesign:::next_step(step, current_df, i)
   5.         └─base::tryCatch(...)
   6.           └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   7.             └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   8.               └─value[[3L]](cond)
  ── Error ('test-demo.R:119:3'): demo runs ──────────────────────────────────────
  Error: Error in step 3 ():
  	Error in loadNamespace(x): there is no package called 'dplyr'
  
  Backtrace:
      ▆
   1. └─DeclareDesign::draw_data(design) at test-demo.R:119:3
   2.   └─DeclareDesign:::get_function_internal(...)
   3.     └─DeclareDesign:::run_design_internal.design(...)
   4.       └─DeclareDesign:::next_step(step, current_df, i)
   5.         └─base::tryCatch(...)
   6.           └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   7.             └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   8.               └─value[[3L]](cond)
  ── Error ('test-design-summary.R:27:3'): Basic design summary ──────────────────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'dplyr'
  Backtrace:
       ▆
    1. ├─base::summary(design) at test-design-summary.R:27:3
    2. ├─DeclareDesign:::summary.design(design)
    3. │ └─design[[i]](last_df)
    4. │   └─rlang::eval_tidy(...)
    5. ├─(FUN)(data = data, ...f = dplyr::mutate, q = 5)
    6. ├─dplyr::mutate
    7. └─base::loadNamespace(x)
    8.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
    9.     └─base (local) withOneRestart(expr, restarts[[1L]])
   10.       └─base (local) doWithOneRestart(return(expr), restart)
  ── Error ('test-diagnose-design.R:55:3'): default diagnosands work ─────────────
  Error: Error in step 4 ():
  	Error in loadNamespace(x): there is no package called 'dplyr'
  
  Backtrace:
       ▆
    1. └─DeclareDesign::diagnose_design(...) at test-diagnose-design.R:55:3
    2.   └─DeclareDesign::simulate_design(!!!dots, sims = sims, future.seed = future.seed)
    3.     └─base::mapply(...)
    4.       └─DeclareDesign (local) `<fn>`(design = dots[[1L]][[1L]], sims = dots[[2L]][[1L]], future.seed = dots[[3L]][[1L]])
    5.         └─DeclareDesign:::future_lapply(...)
    6.           └─base::lapply(...)
    7.             └─DeclareDesign (local) FUN(X[[i]], ...)
    8.               ├─DeclareDesign:::run_design_internal(design)
    9.               └─DeclareDesign:::run_design_internal.design(design)
   10.                 └─DeclareDesign:::next_step(step, current_df, i)
   11.                   └─base::tryCatch(...)
   12.                     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   13.                       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   14.                         └─value[[3L]](cond)
  ── Failure ('test-diagnose-design.R:359:3'): diagnose_design can generate and use grouping variables ──
  dim(tidy(diagnosis)) not equal to c(14, 11).
  1/2 mismatches
  [1] 7 - 14 == -7
  ── Error ('test-diagnose-design.R:416:3'): tidy.diagnosis handles NAs ──────────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'dplyr'
  Backtrace:
      ▆
   1. ├─testthat::expect_equal(...) at test-diagnose-design.R:416:3
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. ├─... %>% dplyr::pull(estimate)
   5. └─base::loadNamespace(x)
   6.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   7.     └─base (local) withOneRestart(expr, restarts[[1L]])
   8.       └─base (local) doWithOneRestart(return(expr), restart)
  ── Error ('test-factorial.R:36:3'): Factorial ──────────────────────────────────
  Error: Error in step 4 ():
  	Error in loadNamespace(x): there is no package called 'dplyr'
  
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-factorial.R:36:3
    2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─my_design %>% draw_data() %>% nrow()
    5. ├─base::nrow(.)
    6. └─DeclareDesign::draw_data(.)
    7.   └─DeclareDesign:::get_function_internal(...)
    8.     └─DeclareDesign:::run_design_internal.design(...)
    9.       └─DeclareDesign:::next_step(step, current_df, i)
   10.         └─base::tryCatch(...)
   11.           └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   12.             └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   13.               └─value[[3L]](cond)
  ── Error ('test-model.R:199:1'): (code run outside of `test_that()`) ───────────
  <packageNotFoundError/error/condition>
  Error in `library(broom)`: there is no package called 'broom'
  Backtrace:
      ▆
   1. └─base::library(broom) at test-model.R:199:1
  ── Error ('test-modify-design.R:4:3'): test modify declare design  ─────────────
  <packageNotFoundError/error/condition>
  Error in `library(dplyr)`: there is no package called 'dplyr'
  Backtrace:
      ▆
   1. └─base::library(dplyr) at test-modify-design.R:4:3
  ── Error ('test-potential-outcomes.R:77:3'): POs at a higher level ─────────────
  <packageNotFoundError/error/condition>
  Error in `library(dplyr)`: there is no package called 'dplyr'
  Backtrace:
      ▆
   1. └─base::library(dplyr) at test-potential-outcomes.R:77:3
  ── Error ('test-reshape-diagnosis.R:31:3'): reshape works ──────────────────────
  Error: Error in step 5 ():
  	Error in loadNamespace(x): there is no package called 'dplyr'
  
  Backtrace:
       ▆
    1. └─DeclareDesign::diagnose_design(design, sims = 10, bootstrap_sims = 5) at test-reshape-diagnosis.R:31:3
    2.   └─DeclareDesign::simulate_design(!!!dots, sims = sims, future.seed = future.seed)
    3.     └─base::mapply(...)
    4.       └─DeclareDesign (local) `<fn>`(design = dots[[1L]][[1L]], sims = dots[[2L]][[1L]], future.seed = dots[[3L]][[1L]])
    5.         └─DeclareDesign:::future_lapply(...)
    6.           └─base::lapply(...)
    7.             └─DeclareDesign (local) FUN(X[[i]], ...)
    8.               ├─DeclareDesign:::run_design_internal(design)
    9.               └─DeclareDesign:::run_design_internal.design(design)
   10.                 └─DeclareDesign:::next_step(step, current_df, i)
   11.                   └─base::tryCatch(...)
   12.                     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   13.                       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   14.                         └─value[[3L]](cond)
  ── Error ('test-reshape-diagnosis.R:92:3'): select ─────────────────────────────
  Error: Error in step 5 ():
  	Error in loadNamespace(x): there is no package called 'dplyr'
  
  Backtrace:
       ▆
    1. └─DeclareDesign::diagnose_design(design, sims = 10, bootstrap_sims = 5) at test-reshape-diagnosis.R:92:3
    2.   └─DeclareDesign::simulate_design(!!!dots, sims = sims, future.seed = future.seed)
    3.     └─base::mapply(...)
    4.       └─DeclareDesign (local) `<fn>`(design = dots[[1L]][[1L]], sims = dots[[2L]][[1L]], future.seed = dots[[3L]][[1L]])
    5.         └─DeclareDesign:::future_lapply(...)
    6.           └─base::lapply(...)
    7.             └─DeclareDesign (local) FUN(X[[i]], ...)
    8.               ├─DeclareDesign:::run_design_internal(design)
    9.               └─DeclareDesign:::run_design_internal.design(design)
   10.                 └─DeclareDesign:::next_step(step, current_df, i)
   11.                   └─base::tryCatch(...)
   12.                     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   13.                       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   14.                         └─value[[3L]](cond)
  ── Failure ('test-sims-independent.R:10:3'): diagnose_design when setting seed they are identical, when not setting seed they are independent ──
  sims_a$estimand not equal to sims_b$estimand.
  10/10 mismatches (average diff: 0.0926)
  [1] -0.07485 - -0.10762 ==  0.03276
  [2]  0.06017 - -0.05773 ==  0.11789
  [3] -0.10128 - -0.03258 == -0.06870
  [4] -0.05224 - -0.08412 ==  0.03187
  [5]  0.04170 -  0.02603 ==  0.01567
  [6] -0.00384 - -0.10276 ==  0.09893
  [7] -0.13463 - -0.13197 == -0.00267
  [8] -0.29041 -  0.00986 == -0.30028
  [9] -0.02717 - -0.09055 ==  0.06338
  ...
  ── Failure ('test-sims-independent.R:17:3'): diagnose_design when setting seed they are identical, when not setting seed they are independent ──
  abs(cor(sims_a$estimand, sims_b$estimand)) is not strictly less than 0.4. Difference: 0.201
  ── Failure ('test-sims-independent.R:33:3'): diagnose_design focused on bootstrapping - when setting seed they are identical, when not setting seed they are independent ──
  sims_a$bootstrap_replicates$mean_estimand not equal to sims_b$bootstrap_replicates$mean_estimand.
  5/5 mismatches (average diff: 0.0277)
  [1] -0.06894 - -0.028784 == -0.0402
  [2] -0.04877 - -0.050873 ==  0.0021
  [3] -0.03300 - -0.000163 == -0.0328
  [4]  0.01144 - -0.012128 ==  0.0236
  [5] -0.00861 -  0.031206 == -0.0398
  ── Failure ('test-sims-independent.R:56:3'): simulate_design when setting seed they are identical, when not setting seed they are independent ──
  sims_a$estimand not equal to sims_b$estimand.
  10/10 mismatches (average diff: 0.139)
  [1] -0.00235 - -0.08320 ==  0.0809
  [2]  0.00145 -  0.12296 == -0.1215
  [3]  0.04563 - -0.13057 ==  0.1762
  [4] -0.03211 - -0.11605 ==  0.0839
  [5]  0.13121 -  0.00819 ==  0.1230
  [6] -0.34551 - -0.09302 == -0.2525
  [7] -0.10777 -  0.03399 == -0.1418
  [8]  0.07937 - -0.08931 ==  0.1687
  [9] -0.07399 -  0.15552 == -0.2295
  ...
  ── Failure ('test-subset.R:24:3'): Test Subsetting on default inquiry handler ──
  design %>% draw_estimands() %>% ... is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 18 | WARN 0 | SKIP 13 | PASS 467 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [9s/13s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs, 1 NOTE
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/DeclareDesign.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 10:37.90, 247.13 + 15.56