* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/D4TAlink.light.Rcheck’ * using R Under development (unstable) (2024-08-23 r87043) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘D4TAlink.light/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘D4TAlink.light’ version ‘2.1.14’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘D4TAlink.light’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s/13s] OK * checking Rd files ... NOTE checkRd: (-1) D4TAlinkTask.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) D4TAlinkTask.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) D4TAlinkTask.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) D4TAlinkTask.Rd:16: Lost braces in \itemize; meant \describe ? checkRd: (-1) D4TAlinkTask.Rd:17: Lost braces in \itemize; meant \describe ? checkRd: (-1) D4TAlinkTask.Rd:18: Lost braces in \itemize; meant \describe ? checkRd: (-1) D4TAlinkTask.Rd:19-20: Lost braces in \itemize; meant \describe ? checkRd: (-1) D4TAlinkTask.Rd:21-22: Lost braces in \itemize; meant \describe ? checkRd: (-1) D4TAlinkTask.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) D4TAlinkTask.Rd:25-26: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(usethis) Error in library(usethis) : there is no package called 'usethis' Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [7s/13s] OK * checking PDF version of manual ... [13s/19s] OK * checking HTML version of manual ... NOTE Found the following HTML validation problems: saveReportTable.html:80:1 (saveReportTable.Rd:36): Warning: trimming empty
* checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 2 NOTEs See ‘/data/gannet/ripley/R/packages/tests-Suggests/D4TAlink.light.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 2:04.04, 67.50 + 11.64