* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/CodeDepends.Rcheck’
* using R Under development (unstable) (2024-04-19 r86451)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘CodeDepends/DESCRIPTION’ ... OK
* this is package ‘CodeDepends’ version ‘0.6.6’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CodeDepends’ can be installed ... [18s/36s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [20s/34s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking include directives in Makefiles ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [8s/16s] ERROR
Running examples in ‘CodeDepends-Ex.R’ failed
The error most likely occurred in:

> ### Name: highlightCode
> ### Title: Display R code with highlighting of variables, links to
> ###   functions and packages
> ### Aliases: highlightCode
> ### Keywords: programming
> 
> ### ** Examples
> 
> f = system.file("samples", "sitepairs.R", package = "CodeDepends")
> ## url checking takes a while, too long for CRAN example
> fout <- file.path(tempdir(), "foo.html")
> highlightCode(f, fout, checkURLs=FALSE)
Loading required namespace: highlight
Failed with error:  ‘there is no package called ‘highlight’’
Error in highlightCode(f, fout, checkURLs = FALSE) : 
  Unable to highlight code without the highlight and/or RJSONIO package(s)
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘draw.R’
  Running ‘inputs.R’
  Running ‘thread.R’
  Running ‘varDeps.R’
 [12s/17s] ERROR
Running the tests in ‘tests/draw.R’ failed.
Complete output:
  > library(CodeDepends)
  > library(Rgraphviz)
  Error in library(Rgraphviz) : there is no package called 'Rgraphviz'
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [12s/17s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs
See
  ‘/data/gannet/ripley/R/packages/tests-Suggests/CodeDepends.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:38.67, 114.95 + 13.56