* using log directory ‘/data/gannet/ripley/R/packages/tests-Suggests/BSL.Rcheck’ * using R Under development (unstable) (2026-06-11 r90128) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7) GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7) * running under: Fedora Linux 42 (Workstation Edition) * using session charset: UTF-8 * current time: 2026-06-11 07:31:44 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘BSL/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘BSL’ version ‘3.2.5’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... INFO Package suggested but not available for checking: ‘rbenchmark’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BSL’ can be installed ... [64s/39s] OK * used C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [20s/21s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... ERROR Running examples in ‘BSL-Ex.R’ failed The error most likely occurred in: > ### Name: MODEL-class > ### Title: S4 class "MODEL" > ### Aliases: MODEL-class MODEL newModel simulation,MODEL-method > ### summStat,ANY,MODEL-method > > ### ** Examples > > # set up the model for the ma2 example > data(ma2) > m <- newModel(fnSim = ma2_sim, fnSum = ma2_sum, simArgs = ma2$sim_args, + theta0 = ma2$start, fnLogPrior = ma2_prior, verbose = FALSE) > validObject(m) [1] TRUE > > # benchmark the serial and vectorised simulation function (require the rbenchmark package) > m1 <- newModel(fnSim = ma2_sim, fnSum = ma2_sum, simArgs = ma2$sim_args, + theta0 = ma2$start, fnLogPrior = ma2_prior) *** initialize "MODEL" *** has simulation function: TRUE has summary statistics function: TRUE has initial guess / point estimate of the parameter: TRUE running a short simulation test ... success *** end initialize *** > m2 <- newModel(fnSimVec = ma2_sim_vec, fnSum = ma2_sum, simArgs = ma2$sim_args, + theta0 = ma2$start, fnLogPrior = ma2_prior) *** initialize "MODEL" *** has simulation function: TRUE has summary statistics function: TRUE has initial guess / point estimate of the parameter: TRUE running a short simulation test ... success *** end initialize *** > require("rbenchmark") Loading required package: rbenchmark Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘rbenchmark’ > ## Don't show: > benchmark(serial = simulation(m1, n = 50, theta = c(0.6, 0.2)), + vectorised = simulation(m2, n = 50, theta = c(0.6, 0.2))) Error in benchmark(serial = simulation(m1, n = 50, theta = c(0.6, 0.2)), : could not find function "benchmark" Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-Suggests/BSL.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 2:21.61, 151.31 + 13.14