* using log directory ‘/data/gannet/ripley/R/packages/tests-noLD/spacom.Rcheck’
* using R Under development (unstable) (2020-01-22 r77697)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘spacom/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘spacom’ version ‘1.0-5’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘spacom’ can be installed ... [25s/70s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [23s/69s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [33s/85s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘CheckExploreMLSpawAggregate.R’ [67s/191s]
  Comparing ‘CheckExploreMLSpawAggregate.Rout’ to ‘CheckExploreMLSpawAggregate.Rout.save’ ...17a18,20
> [1] "identical"
> attr(,"package")
> [1] "base"
  Running ‘CheckOrderSpawExact.R’ [5s/20s]
  Comparing ‘CheckOrderSpawExact.Rout’ to ‘CheckOrderSpawExact.Rout.save’ ... OK
  Running ‘spacom_MLA.R’ [13s/45s]
  Comparing ‘spacom_MLA.Rout’ to ‘spacom_MLA.Rout.save’ ...107,108c107,108
< h.25  0.2358702
< h.50  0.2571817
---
> h.25  0.2358700
> h.50  0.2571815
110c110
< h.200 0.1791366
---
> h.200 0.1791367
149,151d148
< Warning message:
< In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv,  :
<   Model failed to converge with max|grad| = 0.00527558 (tol = 0.002, component 1)
163,165d159
< Warning message:
< In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv,  :
<   Model failed to converge with max|grad| = 0.00738795 (tol = 0.002, component 1)
  Running ‘spacom_bugs.R’ [17s/56s]
  Comparing ‘spacom_bugs.Rout’ to ‘spacom_bugs.Rout.save’ ... OK
 [103s/314s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: OK

Time 13:28.59, 266.10 + 16.38