* using log directory ‘/data/gannet/ripley/R/packages/tests-noLD/mvtnorm.Rcheck’ * using R Under development (unstable) (2026-03-11 r89605) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7) GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7) * running under: Fedora Linux 42 (Workstation Edition) * using session charset: UTF-8 * current time: 2026-03-12 04:42:21 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘mvtnorm/DESCRIPTION’ ... OK * this is package ‘mvtnorm’ version ‘1.3-5’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mvtnorm’ can be installed ... [18s/49s] OK * used C compiler: ‘gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ * used Fortran compiler: ‘GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [22s/58s] OK * checking Rd files ... [13s/31s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking usage of KIND in Fortran files ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [5s/11s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘bugfix-tests.R’ [17s/39s] Comparing ‘bugfix-tests.Rout’ to ‘bugfix-tests.Rout.save’ ... OK Running ‘dmvnorm-Ex.R’ [8s/15s] Running ‘plmvnorm-Ex.R’ [63s/155s] Comparing ‘plmvnorm-Ex.Rout’ to ‘plmvnorm-Ex.Rout.save’ ... OK Running ‘regtest-TVPACK.R’ [10s/28s] Comparing ‘regtest-TVPACK.Rout’ to ‘regtest-TVPACK.Rout.save’ ... OK Running ‘regtest-aperm.R’ [23s/51s] Running ‘regtest-scores.R’ [48s/101s] Comparing ‘regtest-scores.Rout’ to ‘regtest-scores.Rout.save’ ... OK Running ‘regtest_mvnorm.R’ [64s/103s] Running ‘rmvnorm.R’ Running ‘slpmvnorm.R’ [20s/30s] Running ‘test-getInt.R’ Running ‘test-noisy-root.R’ [15s/19s] Comparing ‘test-noisy-root.Rout’ to ‘test-noisy-root.Rout.save’ ... OK [276s/553s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... ‘lmvnorm_src.Rnw’ using ‘UTF-8’... [78s/92s] NOTE differences from ‘lmvnorm_src.Rout.save’ 2024,2027c2024,2027 < Sepal.Length 0.68181 -0.04231 1.2672 0.5134 < Sepal.Width -0.04231 0.18876 -0.3278 -0.1210 < Petal.Length 1.26723 -0.32777 3.0983 1.2880 < Petal.Width 0.51338 -0.12097 1.2880 0.5775 --- > Sepal.Length 0.68133 -0.04211 1.2664 0.5130 > Sepal.Width -0.04211 0.18864 -0.3271 -0.1207 > Petal.Length 1.26636 -0.32714 3.0961 1.2872 > Petal.Width 0.51303 -0.12071 1.2872 0.5773 2084,2087c2084,2087 < Sepal.Length 0.69594 -0.02814 1.2627 0.5223 < Sepal.Width -0.02814 0.19136 -0.3306 -0.1230 < Petal.Length 1.26274 -0.33059 3.1421 1.3128 < Petal.Width 0.52231 -0.12301 1.3128 0.5919 --- > Sepal.Length 0.70567 -0.02523 1.2634 0.5185 > Sepal.Width -0.02523 0.18729 -0.3175 -0.1148 > Petal.Length 1.26343 -0.31746 3.0960 1.2881 > Petal.Width 0.51849 -0.11484 1.2881 0.5773 2094,2097c2094,2097 < Sepal.Length 0.68181 -0.04231 1.2672 0.5134 < Sepal.Width -0.04231 0.18876 -0.3278 -0.1210 < Petal.Length 1.26723 -0.32777 3.0983 1.2880 < Petal.Width 0.51338 -0.12097 1.2880 0.5775 --- > Sepal.Length 0.68133 -0.04211 1.2664 0.5130 > Sepal.Width -0.04211 0.18864 -0.3271 -0.1207 > Petal.Length 1.26636 -0.32714 3.0961 1.2872 > Petal.Width 0.51303 -0.12071 1.2872 0.5773 2112c2112 < 5.758 3.056 3.757 1.197 --- > 5.762 3.057 3.757 1.199 2143c2143 < Petal.Width -0.2072 0.2224 0.5239 --- > Petal.Width -0.2075 0.2228 0.5241 2146c2146 < [1] 0.03588 --- > [1] 0.03587 2152c2152 < Petal.Width -0.1322 0.181 0.4869 --- > Petal.Width -0.1573 0.2169 0.5021 2155c2155 < [1] 0.03996 --- > [1] 0.0365 [79s/92s] NOTE * checking re-building of vignette outputs ... [128s/135s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-noLD/mvtnorm.Rcheck/00check.log’ for details. Time 16:59.52, 565.30 + 19.66