* using log directory ‘/data/localhost/ripley/R/packages/tests-noLD/msma.Rcheck’ * using R Under development (unstable) (2026-11-07 r90849) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20261029 (Red Hat 16.2.1-3) GNU Fortran (GCC) 16.2.1 20261029 (Red Hat 16.2.1-3) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-11-07 08:09:34 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘msma/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘msma’ version ‘5.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘msma’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s/24s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [9s/11s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [14s/14s] [15s/15s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(msma) > test_check("msma") Saving _problems/test-v5-prediction-baseline-17.R Saving _problems/test-v5-prediction-baseline-34.R Saving _problems/test-v5-prediction-baseline-57.R Saving _problems/test-v5-prediction-baseline-91.R Saving _problems/test-v5-prediction-baseline-113.R Saving _problems/test-v5-prediction-baseline-114.R Saving _problems/test-v5-prediction-baseline-132.R Saving _problems/test-v5-prediction-baseline-133.R Saving _problems/test-v5-prediction-baseline-151.R Saving _problems/test-v5-prediction-baseline-169.R Saving _problems/test-v5-prediction-baseline-189.R Saving _problems/test-v5-prediction-fitted-16.R Saving _problems/test-v5-prediction-fitted-20.R [ FAIL 13 | WARN 0 | SKIP 3 | PASS 989 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • Source-tree documentation files are not available. (3): 'test-v5-prediction-documentation.R:37:5', 'test-v5-prediction-documentation.R:82:5', 'test-v5-prediction-documentation.R:160:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-v5-prediction-baseline.R:17:3'): legacy PCA prediction with scaling TRUE matches baseline ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.452876183536078003 - 0.452876183536077837 [1] [2] -0.079225667276012740 - -0.079225667276013267 [2] [3] -0.789884115690939526 | -0.789884115690939526 [3] [4] 0.442155505782371616 - 0.442155505782371006 [4] [5] -0.115007809220551524 - -0.115007809220551316 [5] [6] 0.661078552168546385 - 0.661078552168547051 [6] [7] -0.502318791389847918 - -0.502318791389847030 [7] [8] -0.190689619388338477 - -0.190689619388338866 [8] [9] -0.458052745239417136 - -0.458052745239416692 [9] [10] 0.481785007943845323 - 0.481785007943845656 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -1.18325976537039734 | -1.18325976537039734 [1] [2] 0.28239815369849397 | 0.28239815369849397 [2] [3] 2.11512769491940045 - 2.11512769491940000 [3] [4] -1.09529897858729663 | -1.09529897858729663 [4] [5] 0.28046078205544778 | 0.28046078205544778 [5] [6] -1.87853039058592364 - -1.87853039058592319 [6] [7] 1.21743150441035697 | 1.21743150441035697 [7] [8] 0.56608881968930946 - 0.56608881968930935 [8] [9] 1.16058533493207028 | 1.16058533493207028 [9] [10] -1.31920442448685127 - -1.31920442448685149 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:34:3'): legacy PCA prediction with scaling FALSE matches baseline ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.130399884531725546 - -0.130399884531725629 [1] [2] -0.162578308356472745 - -0.162578308356472218 [2] [3] -0.895494599351058129 | -0.895494599351058129 [3] [4] 0.324260603446073659 - 0.324260603446073270 [4] [5] 0.371899380690175474 | 0.371899380690175474 [5] [6] 0.069972375597097791 - 0.069972375597097874 [6] [7] -0.281724115657135510 - -0.281724115657135454 [7] [8] -1.465732087681434814 - -1.465732087681434592 [8] [9] -0.005570285708659056 - -0.005570285708658917 [9] [10] -0.995315060268986085 - -0.995315060268985752 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -0.378709057563207552 - -0.378709057563207441 [1] [2] -0.242961100002731800 - -0.242961100002732161 [2] [3] 1.640784472210377931 | 1.640784472210377931 [3] [4] -1.192075063031929005 | -1.192075063031929005 [4] [5] -0.455474737519725836 - -0.455474737519725670 [5] [6] 0.626015205420247578 - 0.626015205420247800 [6] [7] 0.219575583256993417 - 0.219575583256993251 [7] [8] -0.801378179166683302 - -0.801378179166683857 [8] [9] -0.528012250226710500 - -0.528012250226710611 [9] [10] 1.783021968961969295 | 1.783021968961969295 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:57:3'): legacy PLS X and Y prediction matches baseline ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.52309430652627320 - -0.52309430652627309 [1] [2] -0.17642282539934817 - -0.17642282539934845 [2] [3] -0.45972317036034971 - -0.45972317036035060 [3] [4] -1.05350891820490800 - -1.05350891820490888 [4] [5] -0.56718711010968481 - -0.56718711010968548 [5] [6] 0.18097673851700016 - 0.18097673851699936 [6] [7] -0.60298022290109354 - -0.60298022290109488 [7] [8] -0.44900378077240177 - -0.44900378077240188 [8] [9] 0.42120209922177054 - 0.42120209922176943 [9] [10] 0.19428861659877134 - 0.19428861659877145 [10] ... ... ... and 38 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.31181826146939562 - 0.31181826146939551 [1] [2] 0.44058677717949379 - 0.44058677717949390 [2] [3] -0.20672814104915782 - -0.20672814104915799 [3] [4] 1.05668408876376496 - 1.05668408876376474 [4] [5] -0.66821032624325305 - -0.66821032624325349 [5] [6] -0.69624578411405147 | -0.69624578411405147 [6] [7] 0.45990899590726586 | 0.45990899590726586 [7] [8] 1.00450498939475641 | 1.00450498939475641 [8] [9] 1.00435613160307224 - 1.00435613160307047 [9] [10] -0.13162459643366581 - -0.13162459643366506 [10] ... ... ... and 6 more ... actual$Y[[1]] | expected$Y[[1]] [1] 1.202706738567213218 - 1.202706738567212774 [1] [2] 1.107076683355467273 | 1.107076683355467273 [2] [3] 0.853082883333361908 - 0.853082883333362241 [3] [4] -0.864102628356016256 - -0.864102628356016700 [4] [5] 1.073773392113207770 - 1.073773392113208658 [5] [6] 0.083172261170429862 - 0.083172261170427808 [6] [7] 0.909439004705058451 - 0.909439004705058895 [7] [8] 0.642609122942905953 - 0.642609122942906064 [8] [9] -0.372637401187602024 - -0.372637401187601136 [9] [10] -0.355134329716220165 - -0.355134329716219332 [10] ... ... ... and 22 more ... actual$sbY[[1]] | expected$sbY[[1]] [1] -0.67440281496621501 - -0.67440281496621490 [1] [2] -0.47660739409271691 - -0.47660739409271669 [2] [3] 0.17019238494876121 - 0.17019238494876143 [3] [4] 0.88201824052136479 - 0.88201824052136468 [4] [5] 0.37789182440954538 - 0.37789182440954583 [5] [6] -0.69097149641876920 | -0.69097149641876920 [6] [7] -0.81991968858760944 | -0.81991968858760944 [7] [8] 0.25222626095032047 - 0.25222626095032064 [8] [9] -1.15619478045684621 - -1.15619478045684532 [9] [10] -1.20785786543765861 - -1.20785786543765816 [10] ... ... ... and 6 more ... ── Failure ('test-v5-prediction-baseline.R:91:3'): single-row legacy prediction matches baseline and stays finite ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 1.09418723795241846 - 1.09418723795241801 [1] [2] -1.09418723795241846 - -1.09418723795241801 [2] [3] 1.09418723795241846 - 1.09418723795241801 [3] [4] -1.09418723795241846 - -1.09418723795241801 [4] [5] -1.09418723795241846 - -1.09418723795241801 [5] [6] -1.09418723795241846 - -1.09418723795241801 [6] `actual$sbX[[1]]`: -1.30906862902939558 1.17240779583392141 `expected$sbX[[1]]`: -1.30906862902939536 1.17240779583392118 ── Failure ('test-v5-prediction-baseline.R:113:3'): legacy prediction remains batch dependent ── Expected `observed_a` to be identical to `expected$batch_a`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.901039161712106074 - -0.901039161712105963 [1] [2] 0.363159018359112573 - 0.363159018359112407 [2] [3] 0.268762591518390881 - 0.268762591518391103 [3] [4] 0.823248914948660593 - 0.823248914948660038 [4] [5] -0.759860079634851138 - -0.759860079634851249 [5] [6] -1.024040236266799297 | -1.024040236266799297 [6] [7] -1.051871031212670671 | -1.051871031212670671 [7] [8] 0.186128422263028170 - 0.186128422263028143 [8] [9] 0.465518019654671322 - 0.465518019654671156 [9] [10] 0.006543747384958512 - 0.006543747384958404 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.713550139120632365 - 0.713550139120633031 [1] [2] -1.240222643738731367 - -1.240222643738731145 [2] [3] 0.058294602617839530 - 0.058294602617839031 [3] [4] -1.313830324281399120 - -1.313830324281398898 [4] [5] 0.416909330241694520 - 0.416909330241695242 [5] [6] 0.878936507188949334 - 0.878936507188950222 [6] [7] 1.573208893649608253 - 1.573208893649608697 [7] [8] 0.082848374731328334 - 0.082848374731328389 [8] [9] -1.215408446075660676 - -1.215408446075660454 [9] [10] 0.003651613363380574 - 0.003651613363380629 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:114:3'): legacy prediction remains batch dependent ── Expected `observed_b` to be identical to `expected$batch_b`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.0834987328657079281 - -0.0834987328657079420 [1] [2] 0.7164640260843857522 - 0.7164640260843854191 [2] [3] 0.7383071888023985396 - 0.7383071888023983176 [3] [4] 1.2416869790219173808 - 1.2416869790219169367 [4] [5] 1.1557746607789032289 | 1.1557746607789032289 [5] [6] 0.5438454608364915455 - 0.5438454608364909904 [6] [7] 0.7309960876172427735 - 0.7309960876172425515 [7] [8] 0.9389355319766935493 - 0.9389355319766932162 [8] [9] 1.2028011496276258541 - 1.2028011496276254100 [9] [10] 0.7525627040089958308 - 0.7525627040089953868 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.023667518245943910 - 0.023667518245943948 [1] [2] 0.245630816471611946 - 0.245630816471611391 [2] [3] -0.027081877813629696 - -0.027081877813630306 [3] [4] 0.705532649728989991 - 0.705532649728989325 [4] [5] 0.073753920820738561 - 0.073753920820738006 [5] [6] 0.722725935264842079 - 0.722725935264841746 [6] [7] 0.136543599320059938 - 0.136543599320059494 [7] [8] 0.563214089054700606 - 0.563214089054700162 [8] [9] 0.571064330127938669 - 0.571064330127937891 [9] [10] 0.599007004240830199 - 0.599007004240829977 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:132:3'): legacy prediction accepts reordered columns and changes results ── Expected `original_result` to be identical to `expected$order_original`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.377851207310070214 - 0.377851207310070158 [1] [2] -1.661923846338249966 - -1.661923846338250188 [2] [3] -0.435415163085951074 - -0.435415163085950907 [3] [4] 1.336839952056728897 - 1.336839952056729119 [4] [5] -0.260404856721396127 - -0.260404856721396238 [5] [6] 0.224063012501865638 - 0.224063012501865610 [6] [7] 0.686007394996470010 - 0.686007394996469566 [7] [8] -0.821575951066536581 - -0.821575951066536136 [8] [9] -0.647018777696336533 - -0.647018777696336422 [9] [10] 0.042101486598538296 - 0.042101486598538518 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -0.352512519580513772 - -0.352512519580514050 [1] [2] 2.787958038405929262 - 2.787958038405929706 [2] [3] 1.331639200146652824 - 1.331639200146652602 [3] [4] -0.955847147775743977 - -0.955847147775744643 [4] [5] 0.490277961321383904 - 0.490277961321384181 [5] [6] 0.420438366175258094 - 0.420438366175257705 [6] [7] -1.202798926228347165 - -1.202798926228347387 [7] [8] 0.988815186193189199 - 0.988815186193189088 [8] [9] 1.179192070653735991 - 1.179192070653736213 [9] [10] -0.735179382065166198 - -0.735179382065166087 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:133:3'): legacy prediction accepts reordered columns and changes results ── Expected `reordered_result` to be identical to `expected$order_reordered`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.232012710474203659 - -0.232012710474203826 [1] [2] -0.007103787754712765 - -0.007103787754712321 [2] [3] -0.245962848808633588 - -0.245962848808633450 [3] [4] -0.101587252040220039 - -0.101587252040220288 [4] [5] 0.243208298252603372 - 0.243208298252603428 [5] [6] -0.933953470350014858 - -0.933953470350015302 [6] [7] 0.894022860229076954 - 0.894022860229077287 [7] [8] -0.399311348539899580 - -0.399311348539899746 [8] [9] 0.023147546093287785 - 0.023147546093287841 [9] [10] 0.091454283206375497 - 0.091454283206375289 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.344115555502553183 - 0.344115555502553294 [1] [2] 0.587581336765274909 - 0.587581336765274131 [2] [3] 0.970076973300089795 - 0.970076973300089240 [3] [4] 0.628299098881815343 - 0.628299098881815454 [4] [5] -0.393994665513056175 - -0.393994665513055953 [5] [6] 1.195507550406464503 - 1.195507550406464725 [6] [7] -1.339329777199537830 - -1.339329777199538052 [7] [8] 1.669908432409993093 - 1.669908432409992871 [8] [9] 0.953664482438456584 - 0.953664482438456362 [9] [10] 0.076765793302974089 - 0.076765793302974436 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:151:3'): legacy multiblock prediction loses block names ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.504460305376386864 - -0.504460305376386753 [1] [2] 0.348554591293172789 - 0.348554591293173011 [2] [3] 0.894840171620574720 - 0.894840171620574609 [3] [4] 0.382532856211924677 - 0.382532856211924455 [4] [5] -0.826959684546365370 | -0.826959684546365370 [5] [6] -0.494210418307085508 - -0.494210418307085397 [6] [7] -1.005368884887174685 - -1.005368884887175129 [7] [8] -0.981402790610048981 - -0.981402790610049425 [8] [9] -0.347839293250235992 - -0.347839293250236214 [9] [10] 1.582388204747431359 - 1.582388204747431582 [10] ... ... ... and 18 more ... actual$X[[2]] | expected$X[[2]] [1] -0.550103168888719019 - -0.550103168888718908 [1] [2] -0.314326015389588820 - -0.314326015389588875 [2] [3] 0.709372955010983408 - 0.709372955010983741 [3] [4] 1.300390306839486421 - 1.300390306839486865 [4] [5] -0.570350875740348373 - -0.570350875740348595 [5] [6] 1.183214844282102884 - 1.183214844282103106 [6] [7] -0.922890651821682395 - -0.922890651821682950 [7] [8] 0.990092429059156176 | 0.990092429059156176 [8] [9] -1.144738029161849191 - -1.144738029161849635 [9] [10] 1.482056561371451586 - 1.482056561371452252 [10] ... ... ... and 11 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -0.022934349077427085 - -0.022934349077427196 [1] [2] -1.050163979928612212 - -1.050163979928612656 [2] [3] -0.123987776839698721 - -0.123987776839699415 [3] [4] 0.197727108153924497 - 0.197727108153924414 [4] [5] 1.230425591137038310 | 1.230425591137038310 [5] [6] 0.220937362474467602 - 0.220937362474467713 [6] [7] 1.106195393721096432 - 1.106195393721097542 [7] [8] -1.073363363736147269 - -1.073363363736147491 [8] [9] -0.258342770455605386 - -0.258342770455605497 [9] [10] 1.749522687451318337 - 1.749522687451318559 [10] ... ... ... and 4 more ... actual$sbX[[2]] | expected$sbX[[2]] [1] 1.656377943653825513 - 1.656377943653824847 [1] [2] -0.924705161360953487 - -0.924705161360953154 [2] [3] 0.882021548017765111 - 0.882021548017764223 [3] [4] -1.014485669035668725 | -1.014485669035668725 [4] [5] -0.102506829844887598 - -0.102506829844887626 [5] [6] -0.578227015634502295 - -0.578227015634502406 [6] [7] 1.114857631877766320 - 1.114857631877766986 [7] [8] 0.266177487655613609 - 0.266177487655613998 [8] [9] -1.005473149034882052 - -1.005473149034882274 [9] [10] 1.523786271699871131 - 1.523786271699871353 [10] ... ... ... and 4 more ... ── Failure ('test-v5-prediction-baseline.R:169:3'): legacy prediction replaces transformed missing values with zero ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.731309470561102071 - 0.731309470561101960 [1] [2] -0.561031006205601313 - -0.561031006205601201 [2] [3] 0.940514623049489296 - 0.940514623049489185 [3] [4] -0.530864693040834279 - -0.530864693040834057 [4] [5] 0.195890450431500496 - 0.195890450431500662 [5] [6] -0.201288468671397797 - -0.201288468671397852 [6] [7] 0.970316774000795634 - 0.970316774000795967 [7] [8] -1.146424868698448618 - -1.146424868698448396 [8] [9] -0.165647173826357685 - -0.165647173826357852 [9] [10] 1.519231174140384999 - 1.519231174140384777 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.384518446517846835 - 0.384518446517846946 [1] [2] -0.900865240818702451 - -0.900865240818702895 [2] [3] -0.152726229247289236 - -0.152726229247289097 [3] [4] -0.301406425890131335 - -0.301406425890131502 [4] [5] -1.793985052892983045 | -1.793985052892983045 [5] [6] 1.127273003797871320 - 1.127273003797871098 [6] [7] -2.518383764690358628 - -2.518383764690359072 [7] [8] 0.897357550023914374 - 0.897357550023914152 [8] [9] 1.368090693065209695 | 1.368090693065209695 [9] [10] -0.759038127662827744 - -0.759038127662827633 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:189:3'): serialized legacy fit predicts identically ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.452876183536078003 - 0.452876183536077837 [1] [2] -0.079225667276012740 - -0.079225667276013267 [2] [3] -0.789884115690939526 | -0.789884115690939526 [3] [4] 0.442155505782371616 - 0.442155505782371006 [4] [5] -0.115007809220551524 - -0.115007809220551316 [5] [6] 0.661078552168546385 - 0.661078552168547051 [6] [7] -0.502318791389847918 - -0.502318791389847030 [7] [8] -0.190689619388338477 - -0.190689619388338866 [8] [9] -0.458052745239417136 - -0.458052745239416692 [9] [10] 0.481785007943845323 - 0.481785007943845656 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -1.18325976537039734 | -1.18325976537039734 [1] [2] 0.28239815369849397 | 0.28239815369849397 [2] [3] 2.11512769491940045 - 2.11512769491940000 [3] [4] -1.09529897858729663 | -1.09529897858729663 [4] [5] 0.28046078205544778 | 0.28046078205544778 [5] [6] -1.87853039058592364 - -1.87853039058592319 [6] [7] 1.21743150441035697 | 1.21743150441035697 [7] [8] 0.56608881968930946 - 0.56608881968930935 [8] [9] 1.16058533493207028 | 1.16058533493207028 [9] [10] -1.31920442448685127 - -1.31920442448685149 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-fitted.R:16:3'): default prediction remains the legacy M3-B baseline ── Expected `predict(fit, newX = Xnew)` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.452876183536078003 - 0.452876183536077837 [1] [2] -0.079225667276012740 - -0.079225667276013267 [2] [3] -0.789884115690939526 | -0.789884115690939526 [3] [4] 0.442155505782371616 - 0.442155505782371006 [4] [5] -0.115007809220551524 - -0.115007809220551316 [5] [6] 0.661078552168546385 - 0.661078552168547051 [6] [7] -0.502318791389847918 - -0.502318791389847030 [7] [8] -0.190689619388338477 - -0.190689619388338866 [8] [9] -0.458052745239417136 - -0.458052745239416692 [9] [10] 0.481785007943845323 - 0.481785007943845656 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -1.18325976537039734 | -1.18325976537039734 [1] [2] 0.28239815369849397 | 0.28239815369849397 [2] [3] 2.11512769491940045 - 2.11512769491940000 [3] [4] -1.09529897858729663 | -1.09529897858729663 [4] [5] 0.28046078205544778 | 0.28046078205544778 [5] [6] -1.87853039058592364 - -1.87853039058592319 [6] [7] 1.21743150441035697 | 1.21743150441035697 [7] [8] 0.56608881968930946 - 0.56608881968930935 [8] [9] 1.16058533493207028 | 1.16058533493207028 [9] [10] -1.31920442448685127 - -1.31920442448685149 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-fitted.R:17:3'): default prediction remains the legacy M3-B baseline ── Expected `predict(fit, newX = Xnew, preprocessing = "legacy")` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.452876183536078003 - 0.452876183536077837 [1] [2] -0.079225667276012740 - -0.079225667276013267 [2] [3] -0.789884115690939526 | -0.789884115690939526 [3] [4] 0.442155505782371616 - 0.442155505782371006 [4] [5] -0.115007809220551524 - -0.115007809220551316 [5] [6] 0.661078552168546385 - 0.661078552168547051 [6] [7] -0.502318791389847918 - -0.502318791389847030 [7] [8] -0.190689619388338477 - -0.190689619388338866 [8] [9] -0.458052745239417136 - -0.458052745239416692 [9] [10] 0.481785007943845323 - 0.481785007943845656 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -1.18325976537039734 | -1.18325976537039734 [1] [2] 0.28239815369849397 | 0.28239815369849397 [2] [3] 2.11512769491940045 - 2.11512769491940000 [3] [4] -1.09529897858729663 | -1.09529897858729663 [4] [5] 0.28046078205544778 | 0.28046078205544778 [5] [6] -1.87853039058592364 - -1.87853039058592319 [6] [7] 1.21743150441035697 | 1.21743150441035697 [7] [8] 0.56608881968930946 - 0.56608881968930935 [8] [9] 1.16058533493207028 | 1.16058533493207028 [9] [10] -1.31920442448685127 - -1.31920442448685149 [10] ... ... ... and 10 more ... [ FAIL 13 | WARN 0 | SKIP 3 | PASS 989 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [19s/20s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-noLD/msma.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 1:46.25, 68.77 + 6.03