* using log directory ‘/data/gannet/ripley/R/packages/tests-noLD/hockeystick.Rcheck’ * using R Under development (unstable) (2026-05-28 r90085) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7) GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7) * running under: Fedora Linux 42 (Workstation Edition) * using session charset: UTF-8 * current time: 2026-05-28 18:52:39 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘hockeystick/DESCRIPTION’ ... OK * this is package ‘hockeystick’ version ‘0.8.7’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘hockeystick’ can be installed ... [14s/20s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [23s/35s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘spelling.R’ Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [51s/105s] ERROR Error(s) in re-building vignettes: --- re-building ‘usinghockeystick.qmd’ using html  processing file: usinghockeystick.qmd trying URL 'https://gml.noaa.gov/webdata/ccgg/trends/co2/co2_mm_mlo.csv' Content type 'text/csv' length 38556 bytes (37 KB) ================================================== downloaded 37 KB trying URL 'https://github.com/owid/co2-data/raw/master/owid-co2-data.csv' Content type 'text/plain; charset=utf-8' length 14331624 bytes (13.7 MB) ================================================== downloaded 13.7 MB trying URL 'https://github.com/owid/co2-data/raw/master/owid-co2-data.csv' Content type 'text/plain; charset=utf-8' length 14331624 bytes (13.7 MB) ================================================== downloaded 13.7 MB trying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' Content type 'text/csv' length 12878 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://gml.noaa.gov/webdata/ccgg/trends/co2/co2_mm_mlo.csv' Content type 'text/csv' length 38556 bytes (37 KB) ================================================== downloaded 37 KB trying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' Content type 'text/csv' length 12878 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' Content type 'text/csv' length 12878 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' Content type 'text/csv' length 12878 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://www.star.nesdis.noaa.gov/socd/lsa/SeaLevelRise/slr/slr_sla_gbl_free_ref_90.csv' Content type 'text/csv' length 38739 bytes (37 KB) ================================================== downloaded 37 KB trying URL 'https://research.csiro.au/slrwavescoast/?ddownload=327' downloaded 379 KB trying URL 'https://noaadata.apps.nsidc.org/NOAA/G02135/seaice_analysis/Sea_Ice_Index_Monthly_Data_with_Statistics_G02135_v4.0.xlsx' Content type 'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet' length 131017 bytes (127 KB) ================================================== downloaded 127 KB trying URL 'https://noaadata.apps.nsidc.org/NOAA/G02135/seaice_analysis/Sea_Ice_Index_Monthly_Data_with_Statistics_G02135_v4.0.xlsx' Content type 'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet' length 131017 bytes (127 KB) ================================================== downloaded 127 KB Error in `open.connection()`: ! cannot open the connection Backtrace: ▆ 1. └─hockeystick::get_hurricanes() 2. ���─xml2::read_html(file_url) 3. └─xml2:::read_html.default(file_url) 4. ├─base::suppressWarnings(...) 5.  │ └─base::withCallingHandlers(...) 6. ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options) 7. └─xml2:::read_xml.character(...) 8. └─xml2:::read_xml.connection(...) 9. ├─base::open(x, "rb") 10. └─base::open.connection(x, "rb")  Quitting from usinghockeystick.qmd:94-100 [hurdat] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `open.connection()`: ! cannot open the connection --- Backtrace: ▆ 1. └─hockeystick::get_hurricanes() 2. ├─xml2::read_html(file_url) 3. └─xml2:::read_html.default(file_url) 4. ├─base::suppressWarnings(...) 5. │ └─base::withCallingHandlers(...) 6. ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options) 7. └─xml2:::read_xml.character(...) 8. └─xml2:::read_xml.connection(...) 9. ├─base::open(x, "rb") 10. └─base::open.connection(x, "rb") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Execution halted WARN: Error encountered when rendering files Error: processing vignette 'usinghockeystick.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error in `quarto_render()`: ✖ Error returned by quarto CLI. ----------------------------- processing file: usinghockeystick.qmd trying URL 'https://gml.noaa.gov/webdata/ccgg/trends/co2/co2_mm_mlo.csv' Content type 'text/csv' length 38556 bytes (37 KB) ================================================== downloaded 37 KB trying URL 'https://github.com/owid/co2-data/raw/master/owid-co2-data.csv' Content type 'text/plain; charset=utf-8' length 14331624 bytes (13.7 MB) ================================================== downloaded 13.7 MB trying URL 'https://github.com/owid/co2-data/raw/master/owid-co2-data.csv' Content type 'text/plain; charset=utf-8' length 14331624 bytes (13.7 MB) ================================================== downloaded 13.7 MB trying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' Content type 'text/csv' length 12878 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://gml.noaa.gov/webdata/ccgg/trends/co2/co2_mm_mlo.csv' Content type 'text/csv' length 38556 bytes (37 KB) ================================================== downloaded 37 KB trying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' Content type 'text/csv' length 12878 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' Content type 'text/csv' length 12878 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' Content type 'text/csv' length 12878 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://www.star.nesdis.noaa.gov/socd/lsa/SeaLevelRise/slr/slr_sla_gbl_free_ref_90.csv' Content type 'text/csv' length 38739 bytes (37 KB) ================================================== downloaded 37 KB trying URL 'https://research.csiro.au/slrwavescoast/?ddownload=327' downloaded 379 KB trying URL 'https://noaadata.apps.nsidc.org/NOAA/G02135/seaice_analysis/Sea_Ice_Index_Monthly_Data_with_Statistics_G02135_v4.0.xlsx' Content type 'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet' length 131017 bytes (127 KB) ================================================== downloaded 127 KB trying URL 'https://noaadata.apps.nsidc.org/NOAA/G02135/seaice_analysis/Sea_Ice_Index_Monthly_Data_with_Statistics_G02135_v4.0.xlsx' Content type 'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet' length 131017 bytes (127 KB) ================================================== downloaded 127 KB Error in `open.connection()`: ! cannot open the connection Backtrace: ▆ 1. └─hockeystick::get_hurricanes() 2. ���─xml2::read_html(file_url) 3. └─xml2:::read_html.default(file_url) 4. ├─base::suppressWarnings(...) 5.  │ └─base::withCallingHandlers(...) 6. ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options) 7. └─xml2:::read_xml.character(...) 8. └─xml2:::read_xml.connection(...) 9. ├─base::open(x, "rb") 10. └─base::open.connection(x, "rb") Quitting from usinghockeystick.qmd:94-100 [hurdat] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `open.connection()`: ! cannot open the connection --- Backtrace: ▆ 1. └─hockeystick::get_hurricanes() 2. ├─xml2::read_html(file_url) 3. └─xml2:::read_html.default(file_url) 4. ├─base::suppressWarnings(...) 5. │ └─base::withCallingHandlers(...) 6. ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options) 7. └─xml2:::read_xml.character(...) 8. └─xml2:::read_xml.connection(...) 9. ├─base::open(x, "rb") 10. └─base::open.connection(x, "rb") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Execution halted WARN: Error encountered when rendering files Caused by error in `processx::run()`: ! System command 'quarto' failed --- failed re-building ‘usinghockeystick.qmd’ SUMMARY: processing the following file failed: ‘usinghockeystick.qmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [8s/11s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-noLD/hockeystick.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 5:21.17, 180.47 + 17.90