* using log directory ‘/data/gannet/ripley/R/packages/tests-noLD/fitdistrplus.Rcheck’
* using R Under development (unstable) (2026-01-10 r89298)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘fitdistrplus/DESCRIPTION’ ... OK
* this is package ‘fitdistrplus’ version ‘1.2-4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fitdistrplus’ can be installed ... [27s/34s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [58s/70s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [41s/50s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘t-CIcdfplot.R’ [34s/42s]
  Running ‘t-Surv2fitdistcens.R’
  Running ‘t-bootdist.R’ [28s/34s]
  Running ‘t-bootdistcens.R’
  Running ‘t-cdfcomp.R’ [8s/11s]
  Running ‘t-cdfcompcens.R’ [11s/12s]
  Running ‘t-cvg-algo.R’
  Running ‘t-denscomp.R’ [10s/12s]
  Running ‘t-descdist.R’
  Running ‘t-detectbound.R’
  Running ‘t-fitbench.R’
  Running ‘t-fitdist-burr.R’ [23s/29s]
  Running ‘t-fitdist-customoptim.R’
  Running ‘t-fitdist-hessianpb.R’
  Running ‘t-fitdist-test-arguments.R’
  Running ‘t-fitdist.R’ [19s/25s]
  Running ‘t-fitdistcens.R’
  Running ‘t-gen-max-spacing-estim.R’
  Running ‘t-getparam.R’
  Running ‘t-gofstat.R’
  Running ‘t-init-actuar.R’
  Running ‘t-llplot.R’ [18s/22s]
  Running ‘t-lnL-surf.R’
  Running ‘t-logLik-vcov-coef.R’
  Running ‘t-manageparam.R’
  Running ‘t-mgedist.R’
  Running ‘t-mledist-asymptotic-vcov.R’ [16s/20s]
  Running ‘t-mledist-cens.R’
  Running ‘t-mledist-cvg-NelderMead.R’
  Running ‘t-mledist-nocens.R’ [18s/21s]
  Running ‘t-mledist-paramsupport.R’ [9s/10s]
  Running ‘t-mmedist-asymptotic-vcov.R’ [16s/19s]
  Running ‘t-mmedist.R’ [20s/27s]
  Running ‘t-msedist.R’
  Running ‘t-parallel.R’
  Running ‘t-plotdist.R’
  Running ‘t-plotdistcens.R’
  Running ‘t-ppcomp.R’ [8s/11s]
  Running ‘t-ppcompcens.R’ [8s/11s]
  Running ‘t-prefit.R’
  Running ‘t-qme-discrete.R’ [15s/24s]
  Running ‘t-qmedist-cvg-NelderMead.R’
  Running ‘t-qmedist.R’ [9s/13s]
  Running ‘t-qqcomp.R’ [9s/13s]
  Running ‘t-qqcompcens.R’ [9s/11s]
  Running ‘t-quantiledist.R’
  Running ‘t-startfixarg-overall.R’
  Running ‘t-starting-value-scale-rate.R’
  Running ‘t-startingvalues-fellerpareto-family.R’
  Running ‘t-startingvalues-inv-family.R’ [13s/17s]
  Running ‘t-startingvalues-invBurr-family.R’
  Running ‘t-startingvalues-invtrgamma-family.R’
  Running ‘t-startingvalues-othercont-family.R’
  Running ‘t-startingvalues-trgamma-family.R’
  Running ‘t-startingvalues-zeromod-family.R’
  Running ‘t-startingvalues-zerotrunc-family.R’
  Running ‘t-startingvalues.R’
  Running ‘t-util-mmedist-vcov.R’
  Running ‘t-util-npmle.R’
  Running ‘t-util-npsurv-mainfunction.R’
  Running ‘t-util-testdensity.R’
  Running ‘t-weird-ppcomp-cens.R’
  Running ‘t-weird-qqcomp-cens.R’
 [449s/572s] ERROR
Running the tests in ‘tests/t-startingvalues-inv-family.R’ failed.
Complete output:
  > 
  > require(actuar)
  Loading required package: actuar
  
  Attaching package: 'actuar'
  
  The following objects are masked from 'package:stats':
  
      sd, var
  
  The following object is masked from 'package:grDevices':
  
      cm
  
  > require(fitdistrplus)
  Loading required package: fitdistrplus
  Loading required package: MASS
  Loading required package: survival
  > n <- 1e4
  > 
  > 
  > #### Inverse exponential ####
  > 
  > x <- rinvexp(n, 3)
  > 
  > if(FALSE)
  + {
  + fitdistrplus:::startarg_invtransgamma_family(x, "invexp")
  + fitdistrplus:::startarg_transgamma_family(1/x, "exp")
  + }
  > 
  > cdfcomp(fitdist(x, "invexp"), xlogscale = TRUE, do.points = FALSE)
  > 
  > 
  > #### Inverse transformed gamma ####
  > 
  > x <- rinvtrgamma(n, 3, 3, 10)
  > 
  > if(FALSE)
  + {
  +   fitdistrplus:::startarg_invtransgamma_family(x, "invtrgamma")
  +   fitdistrplus:::startarg_transgamma_family(1/x, "trgamma")
  +   
  +   cutshapeparam(list("shape0"=1e3, "shape33"=1e-10, "theta"=22))
  +   cutshapeparam(list("shape0"=1e3, "shape33"=1e3, "theta"=22))
  +   
  +   cutshapeparam(fitdistrplus:::startarg_invtransgamma_family(x, "invtrgamma"))
  + }
  > 
  > cdfcomp(fitdist(x, "invtrgamma", lower=0), xlogscale = TRUE, do.points = FALSE)
  Warning messages:
  1: In cov2cor(varcovar) :
    diag(V) had non-positive or NA entries; the non-finite result may be dubious
  2: In sqrt(diag(varcovar)) : NaNs produced
  > cdfcomp(fitdist(x, "invtrgamma", lower=0, start=list("shape1"=100, "shape2"=1, "scale"=1/2)), 
  +         xlogscale = TRUE, do.points = FALSE)
  Error in fitdist(x, "invtrgamma", lower = 0, start = list(shape1 = 100,  : 
    the function mle failed to estimate the parameters, 
                  with the error code 1
  Calls: cdfcomp -> fitdist
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [189s/247s] OK
* checking PDF version of manual ... [12s/16s] OK
* checking HTML version of manual ... [14s/17s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-noLD/fitdistrplus.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 18:39.72, 817.93 + 58.16