* using log directory ‘/data/gannet/ripley/R/packages/tests-noLD/clustord.Rcheck’ * using R Under development (unstable) (2026-03-01 r89508) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2) GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2) * running under: Fedora Linux 42 (Workstation Edition) * using session charset: UTF-8 * current time: 2026-03-02 14:02:53 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘clustord/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘clustord’ version ‘2.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘clustord’ can be installed ... [36s/22s] OK * used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [15s/15s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [223s/225s] [224s/225s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(clustord) > > test_check("clustord") Saving _problems/test_reorder_col-954.R Saving _problems/test_reorder_col-955.R Saving _problems/test_reorder_col-957.R Saving _problems/test_reorder_col-961.R Saving _problems/test_reorder_col-963.R Saving _problems/test_reorder_col-966.R Saving _problems/test_reorder_col-967.R Saving _problems/test_reorder_col-971.R Saving _problems/test_reorder_col-972.R Saving _problems/test_reorder_col-980.R Saving _problems/test_reorder_col-981.R Saving _problems/test_reorder_col-983.R Saving _problems/test_reorder_col-992.R Saving _problems/test_reorder_col-993.R Saving _problems/test_reorder_col-995.R Saving _problems/test_reorder_col-999.R Saving _problems/test_reorder_col-1001.R Saving _problems/test_reorder_col-1005.R Saving _problems/test_reorder_col-1006.R Saving _problems/test_reorder_col-1010.R Saving _problems/test_reorder_col-1011.R Saving _problems/test_reorder_col-1018.R Saving _problems/test_reorder_col-1019.R Saving _problems/test_reorder_col-1021.R Saving _problems/test_reorder_col-1115.R Saving _problems/test_reorder_col-1118.R Saving _problems/test_reorder_col-1119.R Saving _problems/test_reorder_col-1121.R Saving _problems/test_reorder_col-1123.R Saving _problems/test_reorder_col-1125.R Saving _problems/test_reorder_col-1132.R Saving _problems/test_reorder_col-1135.R Saving _problems/test_reorder_col-1145.R Saving _problems/test_reorder_col-1148.R Saving _problems/test_reorder_col-1153.R Saving _problems/test_reorder_col-1155.R Saving _problems/test_reorder_col-1158.R Saving _problems/test_reorder_col-1160.R Saving _problems/test_reorder_col-1163.R Saving _problems/test_reorder_col-1165.R Saving _problems/test_reorder_col-1171.R Saving _problems/test_reorder_col-1174.R Saving _problems/test_reorder_row-772.R Saving _problems/test_reorder_row-773.R Saving _problems/test_reorder_row-775.R Saving _problems/test_reorder_row-786.R Saving _problems/test_reorder_row-788.R Saving _problems/test_reorder_row-792.R Saving _problems/test_reorder_row-793.R Saving _problems/test_reorder_row-797.R Saving _problems/test_reorder_row-798.R Saving _problems/test_reorder_row-805.R Saving _problems/test_reorder_row-806.R Saving _problems/test_reorder_row-808.R Saving _problems/test_reorder_row-822.R Saving _problems/test_reorder_row-823.R Saving _problems/test_reorder_row-825.R Saving _problems/test_reorder_row-836.R Saving _problems/test_reorder_row-838.R Saving _problems/test_reorder_row-841.R Saving _problems/test_reorder_row-842.R Saving _problems/test_reorder_row-846.R Saving _problems/test_reorder_row-847.R Saving _problems/test_reorder_row-855.R Saving _problems/test_reorder_row-856.R Saving _problems/test_reorder_row-858.R Saving _problems/test_reorder_row-873.R Saving _problems/test_reorder_row-874.R Saving _problems/test_reorder_row-876.R Saving _problems/test_reorder_row-880.R Saving _problems/test_reorder_row-882.R Saving _problems/test_reorder_row-885.R Saving _problems/test_reorder_row-887.R Saving _problems/test_reorder_row-890.R Saving _problems/test_reorder_row-892.R Saving _problems/test_reorder_row-899.R Saving _problems/test_reorder_row-902.R Saving _problems/test_reorder_row-912.R Saving _problems/test_reorder_row-913.R Saving _problems/test_reorder_row-915.R Saving _problems/test_reorder_row-920.R Saving _problems/test_reorder_row-922.R Saving _problems/test_reorder_row-925.R Saving _problems/test_reorder_row-927.R Saving _problems/test_reorder_row-930.R Saving _problems/test_reorder_row-932.R Saving _problems/test_reorder_row-939.R Saving _problems/test_reorder_row-942.R Saving _problems/test_reorder_row-956.R Saving _problems/test_reorder_row-957.R Saving _problems/test_reorder_row-959.R Saving _problems/test_reorder_row-963.R Saving _problems/test_reorder_row-965.R Saving _problems/test_reorder_row-982.R Saving _problems/test_reorder_row-983.R Saving _problems/test_reorder_row-985.R Saving _problems/test_reorder_row-994.R Saving _problems/test_reorder_row-995.R Saving _problems/test_reorder_row-997.R Saving _problems/test_reorder_row-1001.R Saving _problems/test_reorder_row-1003.R Saving _problems/test_reorder_row-1020.R Saving _problems/test_reorder_row-1021.R Saving _problems/test_reorder_row-1023.R Saving _problems/test_reorder_row-1215.R Saving _problems/test_reorder_row-1216.R Saving _problems/test_reorder_row-1252.R Saving _problems/test_reorder_row-1253.R Saving _problems/test_reorder_row-1294.R Saving _problems/test_reorder_row-1295.R Saving _problems/test_reorder_row-1297.R Saving _problems/test_reorder_row-1301.R Saving _problems/test_reorder_row-1303.R Saving _problems/test_reorder_row-1306.R Saving _problems/test_reorder_row-1307.R Saving _problems/test_reorder_row-1311.R Saving _problems/test_reorder_row-1312.R Saving _problems/test_reorder_row-1320.R Saving _problems/test_reorder_row-1321.R Saving _problems/test_reorder_row-1323.R Saving _problems/test_reorder_row-1332.R Saving _problems/test_reorder_row-1333.R Saving _problems/test_reorder_row-1335.R Saving _problems/test_reorder_row-1337.R Saving _problems/test_reorder_row-1339.R Saving _problems/test_reorder_row-1341.R Saving _problems/test_reorder_row-1343.R Saving _problems/test_reorder_row-1350.R Saving _problems/test_reorder_row-1351.R Saving _problems/test_reorder_row-1353.R [ FAIL 130 | WARN 0 | SKIP 0 | PASS 3183 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_reorder_col.R:954:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$colc` to equal `orig$out_parlist$colc[c(1, 3, 4, 2)]`. Differences: Names: 2 string mismatches ── Failure ('test_reorder_col.R:955:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$colc_cov[, 1]` to equal `orig$out_parlist$colc_cov[c(1, 3, 4, 2), ]`. Differences: 2/4 mismatches (average diff: 1.15) [2] -1.1088 - 0.0455 == -1.15 [3] 0.0455 - -1.1088 == 1.15 ── Failure ('test_reorder_col.R:957:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_proportions` to equal `orig$column_cluster_proportions[c(1, 3, 4, 2)]`. Differences: 2/4 mismatches (average diff: 0.137) [2] 0.164 - 0.302 == -0.137 [3] 0.302 - 0.164 == 0.137 ── Failure ('test_reorder_col.R:961:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$rowc_format_out_parvec` to equal `reconstruct_out_parvec`. Differences: 4/11 mismatches (average diff: 1.15) [4] -1.0571 - 0.0912 == -1.15 [5] 0.0912 - -1.0571 == 1.15 [8] -1.1088 - 0.0455 == -1.15 [9] 0.0455 - -1.1088 == 1.15 ── Failure ('test_reorder_col.R:963:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_probs` to equal `orig$column_cluster_probs[, c(1, 3, 4, 2)]`. Differences: 60/120 mismatches (average diff: 0.196) [31] 0.2698 - 0.261 == 0.00865 [32] 0.0971 - 0.327 == -0.22954 [33] 0.1947 - 0.289 == -0.09460 [34] 0.1885 - 0.292 == -0.10314 [35] 0.5384 - 0.163 == 0.37578 [36] 0.1365 - 0.311 == -0.17490 [37] 0.1677 - 0.300 == -0.13253 [38] 0.1565 - 0.304 == -0.14761 [39] 0.1574 - 0.304 == -0.14634 ... ── Failure ('test_reorder_col.R:966:5'): reordering column clustering results with other constraint produces correct results. ── Expected `match("2", reord$column_clusters)` to equal `match("3", orig$column_clusters)`. Differences: 1/1 mismatches [1] 5 - NA == NA ── Failure ('test_reorder_col.R:967:5'): reordering column clustering results with other constraint produces correct results. ── Expected `match("3", reord$column_clusters)` to equal `match("4", orig$column_clusters)`. Differences: 1/1 mismatches [1] NA - 5 == NA ── Failure ('test_reorder_col.R:971:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_members[[2]]` to equal `orig$column_cluster_members[[3]]`. Differences: Lengths differ: 2 is not 0 ── Failure ('test_reorder_col.R:972:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_members[[3]]` to equal `orig$column_cluster_members[[4]]`. Differences: Lengths differ: 0 is not 2 ── Failure ('test_reorder_col.R:980:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$colc` to equal `orig$EMstatus$params_for_best_lli$colc[c(1, 3, 4, 2)]`. Differences: Names: 2 string mismatches ── Failure ('test_reorder_col.R:981:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$colc_cov[, 1]` to equal `orig$EMstatus$params_for_best_lli$colc_cov[c(1, 3, 4, 2), ]`. Differences: 2/4 mismatches (average diff: 1.15) [2] -1.1088 - 0.0455 == -1.15 [3] 0.0455 - -1.1088 == 1.15 ── Failure ('test_reorder_col.R:983:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_every_iteration` to equal `...[]`. Differences: Attributes: < Component "dimnames": Component 2: 6 string mismatches > ── Failure ('test_reorder_col.R:992:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$colc` to equal `orig$out_parlist$colc[c(1, 2, 4, 3)]`. Differences: Names: 2 string mismatches ── Failure ('test_reorder_col.R:993:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$colc_cov[, 1]` to equal `orig$out_parlist$colc_cov[c(1, 2, 4, 3), ]`. Differences: 2/4 mismatches (average diff: 1.15) [3] 0.0455 - -1.1088 == 1.15 [4] -1.1088 - 0.0455 == -1.15 ── Failure ('test_reorder_col.R:995:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_proportions` to equal `orig$column_cluster_proportions[c(1, 2, 4, 3)]`. Differences: 2/4 mismatches (average diff: 0.137) [3] 0.302 - 0.164 == 0.137 [4] 0.164 - 0.302 == -0.137 ── Failure ('test_reorder_col.R:999:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$rowc_format_out_parvec` to equal `reconstruct_out_parvec`. Differences: 4/11 mismatches (average diff: 1.15) [5] 0.0912 - -1.0571 == 1.15 [6] -1.0571 - 0.0912 == -1.15 [9] 0.0455 - -1.1088 == 1.15 [10] -1.1088 - 0.0455 == -1.15 ── Failure ('test_reorder_col.R:1001:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_probs` to equal `orig$column_cluster_probs[, c(1, 2, 4, 3)]`. Differences: 60/120 mismatches (average diff: 0.196) [61] 0.261 - 0.2698 == -0.00865 [62] 0.327 - 0.0971 == 0.22954 [63] 0.289 - 0.1947 == 0.09460 [64] 0.292 - 0.1885 == 0.10314 [65] 0.163 - 0.5384 == -0.37578 [66] 0.311 - 0.1365 == 0.17490 [67] 0.300 - 0.1677 == 0.13253 [68] 0.304 - 0.1565 == 0.14761 [69] 0.304 - 0.1574 == 0.14634 ... ── Failure ('test_reorder_col.R:1005:5'): reordering column clustering results with other constraint produces correct results. ── Expected `match("3", reord$column_clusters)` to equal `match("4", orig$column_clusters)`. Differences: 1/1 mismatches [1] NA - 5 == NA ── Failure ('test_reorder_col.R:1006:5'): reordering column clustering results with other constraint produces correct results. ── Expected `match("4", reord$column_clusters)` to equal `match("3", orig$column_clusters)`. Differences: 1/1 mismatches [1] 5 - NA == NA ── Failure ('test_reorder_col.R:1010:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_members[[3]]` to equal `orig$column_cluster_members[[4]]`. Differences: Lengths differ: 0 is not 2 ── Failure ('test_reorder_col.R:1011:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_members[[4]]` to equal `orig$column_cluster_members[[3]]`. Differences: Lengths differ: 2 is not 0 ── Failure ('test_reorder_col.R:1018:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$colc` to equal `orig$EMstatus$params_for_best_lli$colc[c(1, 2, 4, 3)]`. Differences: Names: 2 string mismatches ── Failure ('test_reorder_col.R:1019:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$colc_cov[, 1]` to equal `orig$EMstatus$params_for_best_lli$colc_cov[c(1, 2, 4, 3), ]`. Differences: 2/4 mismatches (average diff: 1.15) [3] 0.0455 - -1.1088 == 1.15 [4] -1.1088 - 0.0455 == -1.15 ── Failure ('test_reorder_col.R:1021:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_every_iteration` to equal `...[]`. Differences: Attributes: < Component "dimnames": Component 2: 6 string mismatches > ── Failure ('test_reorder_col.R:1115:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$colc` to equal `orig$out_parlist$colc`. Differences: Names: 2 string mismatches ── Failure ('test_reorder_col.R:1118:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_proportions` to equal `orig$column_cluster_proportions`. Differences: 2/4 mismatches (average diff: 0.384) [2] 0.0493 - 0.4338 == -0.384 [4] 0.4338 - 0.0493 == 0.384 ── Failure ('test_reorder_col.R:1119:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$rowc_format_out_parvec` to equal `orig$rowc_format_out_parvec`. Differences: 6/22 mismatches (average diff: 1.22) [3] -2.7072 - 0.02910 == -2.7363 [5] 0.0291 - -2.70722 == 2.7363 [14] -0.5031 - 0.17615 == -0.6793 [15] 0.3963 - -0.09922 == 0.4955 [16] -0.0489 - -0.00724 == -0.0417 [17] 0.4378 - -0.18873 == 0.6266 ── Failure ('test_reorder_col.R:1121:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_probs` to equal `orig$column_cluster_probs`. Differences: 60/120 mismatches (average diff: 0.441) [31] 0.023297 - 0.4264 == -0.403 [32] 0.000297 - 0.4739 == -0.474 [33] 0.007988 - 0.4578 == -0.450 [34] 0.049101 - 0.4088 == -0.360 [35] 0.853520 - 0.0638 == 0.790 [36] 0.004373 - 0.4563 == -0.452 [37] 0.001172 - 0.4634 == -0.462 [38] 0.001981 - 0.4564 == -0.454 [39] 0.000598 - 0.4606 == -0.460 ... ── Failure ('test_reorder_col.R:1123:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_clusters` to equal `orig$column_clusters`. Differences: 30/30 mismatches (average diff: 2) [1] 4 - 2 == 2 [2] 4 - 2 == 2 [3] 4 - 2 == 2 [4] 4 - 2 == 2 [5] 2 - 4 == -2 [6] 4 - 2 == 2 [7] 4 - 2 == 2 [8] 4 - 2 == 2 [9] 4 - 2 == 2 ... ── Failure ('test_reorder_col.R:1125:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_members` to equal `orig$column_cluster_members`. Differences: Component 2: Numeric: lengths (2, 28) differ Component 4: Numeric: lengths (28, 2) differ ── Failure ('test_reorder_col.R:1132:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$colc` to equal `orig$EMstatus$params_for_best_lli$colc`. Differences: Names: 2 string mismatches ── Failure ('test_reorder_col.R:1135:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_every_iteration` to equal `orig$EMstatus$params_every_iteration`. Differences: Attributes: < Component "dimnames": Component 2: 14 string mismatches > ── Failure ('test_reorder_col.R:1145:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$colc` to equal `orig$out_parlist$colc[c(1, 4, 3, 2)]`. Differences: Names: 2 string mismatches ── Failure ('test_reorder_col.R:1148:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_proportions` to equal `orig$column_cluster_proportions[c(1, 4, 3, 2)]`. Differences: 2/4 mismatches (average diff: 0.384) [2] 0.4338 - 0.0493 == 0.384 [4] 0.0493 - 0.4338 == -0.384 ── Failure ('test_reorder_col.R:1153:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$rowc_format_out_parvec` to equal `reconstruct_out_parvec`. Differences: 6/22 mismatches (average diff: 1.22) [3] 0.02910 - -2.7072 == 2.7363 [5] -2.70722 - 0.0291 == -2.7363 [14] 0.17615 - -0.5031 == 0.6793 [15] -0.09922 - 0.3963 == -0.4955 [16] -0.00724 - -0.0489 == 0.0417 [17] -0.18873 - 0.4378 == -0.6266 ── Failure ('test_reorder_col.R:1155:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_probs` to equal `orig$column_cluster_probs[, c(1, 4, 3, 2)]`. Differences: 60/120 mismatches (average diff: 0.441) [31] 0.4264 - 0.023297 == 0.403 [32] 0.4739 - 0.000297 == 0.474 [33] 0.4578 - 0.007988 == 0.450 [34] 0.4088 - 0.049101 == 0.360 [35] 0.0638 - 0.853520 == -0.790 [36] 0.4563 - 0.004373 == 0.452 [37] 0.4634 - 0.001172 == 0.462 [38] 0.4564 - 0.001981 == 0.454 [39] 0.4606 - 0.000598 == 0.460 ... ── Failure ('test_reorder_col.R:1158:5'): reordering column clustering results with other constraint produces correct results. ── Expected `match("2", reord$column_clusters)` to equal `match("4", orig$column_clusters)`. Differences: 1/1 mismatches [1] 1 - 5 == -4 ── Failure ('test_reorder_col.R:1160:5'): reordering column clustering results with other constraint produces correct results. ── Expected `match("4", reord$column_clusters)` to equal `match("2", orig$column_clusters)`. Differences: 1/1 mismatches [1] 5 - 1 == 4 ── Failure ('test_reorder_col.R:1163:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_members[[2]]` to equal `orig$column_cluster_members[[4]]`. Differences: Lengths differ: 28 is not 2 ── Failure ('test_reorder_col.R:1165:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$column_cluster_members[[4]]` to equal `orig$column_cluster_members[[2]]`. Differences: Lengths differ: 2 is not 28 ── Failure ('test_reorder_col.R:1171:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$colc` to equal `orig$EMstatus$params_for_best_lli$colc[c(1, 4, 3, 2)]`. Differences: Names: 2 string mismatches ── Failure ('test_reorder_col.R:1174:5'): reordering column clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_every_iteration` to equal `...[]`. Differences: Attributes: < Component "dimnames": Component 2: 14 string mismatches > ── Failure ('test_reorder_row.R:772:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc` to equal `orig$out_parlist$rowc[c(1, 3, 4, 2)]`. Differences: Names: 3 string mismatches ── Failure ('test_reorder_row.R:773:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc_cov[, 1]` to equal `orig$out_parlist$rowc_cov[c(1, 3, 4, 2), ]`. Differences: 3/4 mismatches (average diff: 0.0378) [2] 0.269 - 0.214 == 0.055852 [3] 0.213 - 0.269 == -0.056631 [4] 0.214 - 0.213 == 0.000779 ── Failure ('test_reorder_row.R:775:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_proportions` to equal `orig$row_cluster_proportions[c(1, 3, 4, 2)]`. Differences: 3/4 mismatches (average diff: 0.0631) [2] 0.242 - 0.175 == 0.0665 [3] 0.270 - 0.242 == 0.0282 [4] 0.175 - 0.270 == -0.0947 ── Failure ('test_reorder_row.R:786:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parvec` to equal `reconstruct_out_parvec`. Differences: 6/22 mismatches (average diff: 0.0698) [4] 0.212 - 0.364 == -0.152836 [5] 0.331 - 0.212 == 0.118972 [6] 0.364 - 0.331 == 0.033865 [12] 0.269 - 0.214 == 0.055852 [13] 0.213 - 0.269 == -0.056631 [14] 0.214 - 0.213 == 0.000779 ── Failure ('test_reorder_row.R:788:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_probs` to equal `orig$row_cluster_probs[, c(1, 3, 4, 2)]`. Differences: 90/120 mismatches (average diff: 0.0633) [31] 0.242 - 0.162 == 0.0795 [32] 0.242 - 0.169 == 0.0736 [33] 0.242 - 0.169 == 0.0724 [34] 0.241 - 0.156 == 0.0846 [35] 0.240 - 0.147 == 0.0934 [36] 0.243 - 0.177 == 0.0651 [37] 0.237 - 0.223 == 0.0136 [38] 0.240 - 0.152 == 0.0880 [39] 0.243 - 0.179 == 0.0639 ... ── Failure ('test_reorder_row.R:792:5'): reordering row clustering results with other constraint produces correct results. ── Expected `match("3", reord$row_clusters)` to equal `match("4", orig$row_clusters)`. Differences: 1/1 mismatches [1] 7 - NA == NA ── Failure ('test_reorder_row.R:793:5'): reordering row clustering results with other constraint produces correct results. ── Expected `match("4", reord$row_clusters)` to equal `match("2", orig$row_clusters)`. Differences: 1/1 mismatches [1] NA - 7 == NA ── Failure ('test_reorder_row.R:797:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_members[[3]]` to equal `orig$row_cluster_members[[4]]`. Differences: Lengths differ: 6 is not 0 ── Failure ('test_reorder_row.R:798:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_members[[4]]` to equal `orig$row_cluster_members[[2]]`. Differences: Lengths differ: 0 is not 6 ── Failure ('test_reorder_row.R:805:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$rowc` to equal `orig$EMstatus$params_for_best_lli$rowc[c(1, 3, 4, 2)]`. Differences: 3/4 mismatches (average diff: 0.102) [2] 0.212 - 0.364 == -0.1528 [3] 0.331 - 0.212 == 0.1190 [4] 0.364 - 0.331 == 0.0339 ── Failure ('test_reorder_row.R:806:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$rowc_cov[, 1]` to equal `orig$EMstatus$params_for_best_lli$rowc_cov[c(1, 3, 4, 2), ]`. Differences: 3/4 mismatches (average diff: 0.0378) [2] 0.269 - 0.214 == 0.055852 [3] 0.213 - 0.269 == -0.056631 [4] 0.214 - 0.213 == 0.000779 ── Failure ('test_reorder_row.R:808:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_every_iteration` to equal `...[]`. Differences: Attributes: < Component "dimnames": Component 2: 9 string mismatches > ── Failure ('test_reorder_row.R:822:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc` to equal `orig$out_parlist$rowc[c(1, 2, 4, 3)]`. Differences: Names: 3 string mismatches ── Failure ('test_reorder_row.R:823:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc_cov[, 1]` to equal `orig$out_parlist$rowc_cov[c(1, 2, 4, 3), ]`. Differences: 3/4 mismatches (average diff: 0.0378) [2] 0.214 - 0.213 == 0.000779 [3] 0.213 - 0.269 == -0.056631 [4] 0.269 - 0.214 == 0.055852 ── Failure ('test_reorder_row.R:825:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_proportions` to equal `orig$row_cluster_proportions[c(1, 2, 4, 3)]`. Differences: 3/4 mismatches (average diff: 0.0631) [2] 0.175 - 0.270 == -0.0947 [3] 0.270 - 0.242 == 0.0282 [4] 0.242 - 0.175 == 0.0665 ── Failure ('test_reorder_row.R:836:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parvec` to equal `reconstruct_out_parvec`. Differences: 6/22 mismatches (average diff: 0.0698) [4] 0.364 - 0.331 == 0.033865 [5] 0.331 - 0.212 == 0.118972 [6] 0.212 - 0.364 == -0.152836 [12] 0.214 - 0.213 == 0.000779 [13] 0.213 - 0.269 == -0.056631 [14] 0.269 - 0.214 == 0.055852 ── Failure ('test_reorder_row.R:838:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_probs` to equal `orig$row_cluster_probs[, c(1, 2, 4, 3)]`. Differences: 90/120 mismatches (average diff: 0.0633) [31] 0.162 - 0.255 == -0.0930 [32] 0.169 - 0.263 == -0.0943 [33] 0.169 - 0.264 == -0.0947 [34] 0.156 - 0.248 == -0.0920 [35] 0.147 - 0.235 == -0.0880 [36] 0.177 - 0.273 == -0.0954 [37] 0.223 - 0.325 == -0.1013 [38] 0.152 - 0.243 == -0.0914 [39] 0.179 - 0.276 == -0.0962 ... ── Failure ('test_reorder_row.R:841:5'): reordering row clustering results with other constraint produces correct results. ── Expected `match("2", reord$row_clusters)` to equal `match("2", orig$row_clusters)`. Differences: 1/1 mismatches [1] NA - 7 == NA ── Failure ('test_reorder_row.R:842:5'): reordering row clustering results with other constraint produces correct results. ── Expected `match("3", reord$row_clusters)` to equal `match("4", orig$row_clusters)`. Differences: 1/1 mismatches [1] 7 - NA == NA ── Failure ('test_reorder_row.R:846:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_members[[2]]` to equal `orig$row_cluster_members[[2]]`. Differences: Lengths differ: 0 is not 6 ── Failure ('test_reorder_row.R:847:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_members[[3]]` to equal `orig$row_cluster_members[[4]]`. Differences: Lengths differ: 6 is not 0 ── Failure ('test_reorder_row.R:855:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$rowc` to equal `orig$EMstatus$params_for_best_lli$rowc[c(1, 2, 4, 3)]`. Differences: 3/4 mismatches (average diff: 0.102) [2] 0.364 - 0.331 == 0.0339 [3] 0.331 - 0.212 == 0.1190 [4] 0.212 - 0.364 == -0.1528 ── Failure ('test_reorder_row.R:856:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$rowc_cov[, 1]` to equal `orig$EMstatus$params_for_best_lli$rowc_cov[c(1, 2, 4, 3), ]`. Differences: 3/4 mismatches (average diff: 0.0378) [2] 0.214 - 0.213 == 0.000779 [3] 0.213 - 0.269 == -0.056631 [4] 0.269 - 0.214 == 0.055852 ── Failure ('test_reorder_row.R:858:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_every_iteration` to equal `...[]`. Differences: Attributes: < Component "dimnames": Component 2: 9 string mismatches > ── Failure ('test_reorder_row.R:873:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc` to equal `orig$out_parlist$rowc[c(1, 3, 2, 4)]`. Differences: Names: 2 string mismatches ── Failure ('test_reorder_row.R:874:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc_col` to equal `orig$out_parlist$rowc_col[c(1, 3, 2, 4), ]`. Differences: 10/20 mismatches (average diff: 0.89) [2] -0.3828 - 0.3442 == -0.727 [4] 0.3442 - -0.3828 == 0.727 [6] -0.0992 - 0.0966 == -0.196 [8] 0.0966 - -0.0992 == 0.196 [10] 0.7433 - -0.5177 == 1.261 [12] -0.5177 - 0.7433 == -1.261 [14] -0.9821 - 0.3198 == -1.302 [16] 0.3198 - -0.9821 == 1.302 [18] 0.7209 - -0.2428 == 0.964 ... ── Failure ('test_reorder_row.R:876:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_proportions` to equal `orig$row_cluster_proportions[c(1, 3, 2, 4)]`. Differences: 2/4 mismatches (average diff: 0.0769) [2] 0.264 - 0.187 == 0.0769 [4] 0.187 - 0.264 == -0.0769 ── Failure ('test_reorder_row.R:880:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parvec` to equal `reconstruct_out_parvec`. Differences: 6/23 mismatches (average diff: 0.662) [4] 0.3397 - 0.5826 == -0.243 [6] 0.5826 - 0.3397 == 0.243 [15] -0.3828 - 0.3442 == -0.727 [16] -0.0992 - 0.0966 == -0.196 [17] 0.7433 - -0.5177 == 1.261 [18] -0.9821 - 0.3198 == -1.302 ── Failure ('test_reorder_row.R:882:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_probs` to equal `orig$row_cluster_probs[, c(1, 3, 2, 4)]`. Differences: 60/120 mismatches (average diff: 0.138) [31] 0.351 - 0.182 == 0.1688 [32] 0.172 - 0.220 == -0.0485 [33] 0.173 - 0.227 == -0.0544 [34] 0.457 - 0.114 == 0.3428 [35] 0.328 - 0.118 == 0.2105 [36] 0.353 - 0.175 == 0.1773 [37] 0.371 - 0.219 == 0.1518 [38] 0.310 - 0.157 == 0.1531 [39] 0.204 - 0.215 == -0.0110 ... ── Failure ('test_reorder_row.R:885:5'): reordering row clustering results with other constraint produces correct results. ── Expected `match("2", reord$row_clusters)` to equal `match("3", orig$row_clusters)`. Differences: 1/1 mismatches [1] 1 - NA == NA ── Failure ('test_reorder_row.R:887:5'): reordering row clustering results with other constraint produces correct results. ── Expected `match("4", reord$row_clusters)` to equal `match("4", orig$row_clusters)`. Differences: 1/1 mismatches [1] NA - 1 == NA ── Failure ('test_reorder_row.R:890:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_members[[2]]` to equal `orig$row_cluster_members[[3]]`. Differences: Lengths differ: 9 is not 0 ── Failure ('test_reorder_row.R:892:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_members[[4]]` to equal `orig$row_cluster_members[[4]]`. Differences: Lengths differ: 0 is not 9 ── Failure ('test_reorder_row.R:899:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$rowc` to equal `orig$EMstatus$params_for_best_lli$rowc[c(1, 3, 2, 4)]`. Differences: 2/4 mismatches (average diff: 0.243) [2] 0.340 - 0.583 == -0.243 [4] 0.583 - 0.340 == 0.243 ── Failure ('test_reorder_row.R:902:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_every_iteration` to equal `...[]`. Differences: Attributes: < Component "dimnames": Component 2: 14 string mismatches > ── Failure ('test_reorder_row.R:912:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc` to equal `orig$out_parlist$rowc[c(1, 4, 2, 3)]`. Differences: Names: 2 string mismatches ── Failure ('test_reorder_row.R:913:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc_col` to equal `orig$out_parlist$rowc_col[c(1, 4, 2, 3), ]`. Differences: 10/20 mismatches (average diff: 0.89) [2] 0.3442 - -0.3828 == 0.727 [4] -0.3828 - 0.3442 == -0.727 [6] 0.0966 - -0.0992 == 0.196 [8] -0.0992 - 0.0966 == -0.196 [10] -0.5177 - 0.7433 == -1.261 [12] 0.7433 - -0.5177 == 1.261 [14] 0.3198 - -0.9821 == 1.302 [16] -0.9821 - 0.3198 == -1.302 [18] -0.2428 - 0.7209 == -0.964 ... ── Failure ('test_reorder_row.R:915:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_proportions` to equal `orig$row_cluster_proportions[c(1, 4, 2, 3)]`. Differences: 2/4 mismatches (average diff: 0.0769) [2] 0.187 - 0.264 == -0.0769 [4] 0.264 - 0.187 == 0.0769 ── Failure ('test_reorder_row.R:920:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parvec` to equal `reconstruct_out_parvec`. Differences: 6/23 mismatches (average diff: 0.662) [4] 0.5826 - 0.3397 == 0.243 [6] 0.3397 - 0.5826 == -0.243 [15] 0.3442 - -0.3828 == 0.727 [16] 0.0966 - -0.0992 == 0.196 [17] -0.5177 - 0.7433 == -1.261 [18] 0.3198 - -0.9821 == 1.302 ── Failure ('test_reorder_row.R:922:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_probs` to equal `orig$row_cluster_probs[, c(1, 4, 2, 3)]`. Differences: 60/120 mismatches (average diff: 0.138) [31] 0.182 - 0.351 == -0.1688 [32] 0.220 - 0.172 == 0.0485 [33] 0.227 - 0.173 == 0.0544 [34] 0.114 - 0.457 == -0.3428 [35] 0.118 - 0.328 == -0.2105 [36] 0.175 - 0.353 == -0.1773 [37] 0.219 - 0.371 == -0.1518 [38] 0.157 - 0.310 == -0.1531 [39] 0.215 - 0.204 == 0.0110 ... ── Failure ('test_reorder_row.R:925:5'): reordering row clustering results with other constraint produces correct results. ── Expected `match("2", reord$row_clusters)` to equal `match("4", orig$row_clusters)`. Differences: 1/1 mismatches [1] NA - 1 == NA ── Failure ('test_reorder_row.R:927:5'): reordering row clustering results with other constraint produces correct results. ── Expected `match("4", reord$row_clusters)` to equal `match("3", orig$row_clusters)`. Differences: 1/1 mismatches [1] 1 - NA == NA ── Failure ('test_reorder_row.R:930:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_members[[2]]` to equal `orig$row_cluster_members[[4]]`. Differences: Lengths differ: 0 is not 9 ── Failure ('test_reorder_row.R:932:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_members[[4]]` to equal `orig$row_cluster_members[[3]]`. Differences: Lengths differ: 9 is not 0 ── Failure ('test_reorder_row.R:939:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$rowc` to equal `orig$EMstatus$params_for_best_lli$rowc[c(1, 4, 2, 3)]`. Differences: 2/4 mismatches (average diff: 0.243) [2] 0.583 - 0.340 == 0.243 [4] 0.340 - 0.583 == -0.243 ── Failure ('test_reorder_row.R:942:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_every_iteration` to equal `...[]`. Differences: Attributes: < Component "dimnames": Component 2: 14 string mismatches > ── Failure ('test_reorder_row.R:956:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc` to equal `orig$out_parlist$rowc[c(1, 3, 4, 2)]`. Differences: Names: 2 string mismatches ── Failure ('test_reorder_row.R:957:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc_cov[, 1]` to equal `orig$out_parlist$rowc_cov[c(1, 3, 4, 2), ]`. Differences: 2/4 mismatches (average diff: 0.0655) [2] -0.239 - -0.173 == -0.0655 [3] -0.173 - -0.239 == 0.0655 ── Failure ('test_reorder_row.R:959:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_proportions` to equal `orig$row_cluster_proportions[c(1, 3, 4, 2)]`. Differences: 2/4 mismatches (average diff: 0.0775) [2] 0.221 - 0.144 == 0.0775 [3] 0.144 - 0.221 == -0.0775 ── Failure ('test_reorder_row.R:963:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parvec` to equal `reconstruct_out_parvec`. Differences: 4/11 mismatches (average diff: 0.147) [4] 0.372 - 0.600 == -0.2278 [5] 0.600 - 0.372 == 0.2278 [8] -0.239 - -0.173 == -0.0655 [9] -0.173 - -0.239 == 0.0655 ── Failure ('test_reorder_row.R:965:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_probs` to equal `orig$row_cluster_probs[, c(1, 3, 4, 2)]`. Differences: 60/120 mismatches (average diff: 0.0775) [31] 0.228 - 0.144 == 0.08341 [32] 0.229 - 0.147 == 0.08236 [33] 0.223 - 0.133 == 0.09013 [34] 0.217 - 0.120 == 0.09641 [35] 0.207 - 0.106 == 0.10141 [36] 0.220 - 0.126 == 0.09402 [37] 0.228 - 0.229 == -0.00127 [38] 0.207 - 0.106 == 0.10107 [39] 0.232 - 0.155 == 0.07683 ... ── Failure ('test_reorder_row.R:982:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$rowc` to equal `orig$EMstatus$params_for_best_lli$rowc[c(1, 3, 4, 2)]`. Differences: 2/4 mismatches (average diff: 0.228) [2] 0.372 - 0.600 == -0.228 [3] 0.600 - 0.372 == 0.228 ── Failure ('test_reorder_row.R:983:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$rowc_cov[, 1]` to equal `orig$EMstatus$params_for_best_lli$rowc_cov[c(1, 3, 4, 2), ]`. Differences: 2/4 mismatches (average diff: 0.0655) [2] -0.239 - -0.173 == -0.0655 [3] -0.173 - -0.239 == 0.0655 ── Failure ('test_reorder_row.R:985:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_every_iteration` to equal `...[]`. Differences: Attributes: < Component "dimnames": Component 2: 6 string mismatches > ── Failure ('test_reorder_row.R:994:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc` to equal `orig$out_parlist$rowc[c(1, 2, 4, 3)]`. Differences: Names: 2 string mismatches ── Failure ('test_reorder_row.R:995:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc_cov[, 1]` to equal `orig$out_parlist$rowc_cov[c(1, 2, 4, 3), ]`. Differences: 2/4 mismatches (average diff: 0.0655) [3] -0.173 - -0.239 == 0.0655 [4] -0.239 - -0.173 == -0.0655 ── Failure ('test_reorder_row.R:997:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_proportions` to equal `orig$row_cluster_proportions[c(1, 2, 4, 3)]`. Differences: 2/4 mismatches (average diff: 0.0775) [3] 0.144 - 0.221 == -0.0775 [4] 0.221 - 0.144 == 0.0775 ── Failure ('test_reorder_row.R:1001:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parvec` to equal `reconstruct_out_parvec`. Differences: 4/11 mismatches (average diff: 0.147) [5] 0.600 - 0.372 == 0.2278 [6] 0.372 - 0.600 == -0.2278 [9] -0.173 - -0.239 == 0.0655 [10] -0.239 - -0.173 == -0.0655 ── Failure ('test_reorder_row.R:1003:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_probs` to equal `orig$row_cluster_probs[, c(1, 2, 4, 3)]`. Differences: 60/120 mismatches (average diff: 0.0775) [61] 0.144 - 0.228 == -0.08341 [62] 0.147 - 0.229 == -0.08236 [63] 0.133 - 0.223 == -0.09013 [64] 0.120 - 0.217 == -0.09641 [65] 0.106 - 0.207 == -0.10141 [66] 0.126 - 0.220 == -0.09402 [67] 0.229 - 0.228 == 0.00127 [68] 0.106 - 0.207 == -0.10107 [69] 0.155 - 0.232 == -0.07683 ... ── Failure ('test_reorder_row.R:1020:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$rowc` to equal `orig$EMstatus$params_for_best_lli$rowc[c(1, 2, 4, 3)]`. Differences: 2/4 mismatches (average diff: 0.228) [3] 0.600 - 0.372 == 0.228 [4] 0.372 - 0.600 == -0.228 ── Failure ('test_reorder_row.R:1021:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$rowc_cov[, 1]` to equal `orig$EMstatus$params_for_best_lli$rowc_cov[c(1, 2, 4, 3), ]`. Differences: 2/4 mismatches (average diff: 0.0655) [3] -0.173 - -0.239 == 0.0655 [4] -0.239 - -0.173 == -0.0655 ── Failure ('test_reorder_row.R:1023:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_every_iteration` to equal `...[]`. Differences: Attributes: < Component "dimnames": Component 2: 6 string mismatches > ── Failure ('test_reorder_row.R:1215:5'): reordering row clustering results with other constraint produces correct results. ── Expected `match("3", reord$row_clusters)` to equal `match("4", orig$row_clusters)`. Differences: 1/1 mismatches [1] 7 - NA == NA ── Failure ('test_reorder_row.R:1216:5'): reordering row clustering results with other constraint produces correct results. ── Expected `match("4", reord$row_clusters)` to equal `match("2", orig$row_clusters)`. Differences: 1/1 mismatches [1] NA - 7 == NA ── Failure ('test_reorder_row.R:1252:5'): reordering row clustering results with other constraint produces correct results. ── Expected `match("3", reord$row_clusters)` to equal `match("4", orig$row_clusters)`. Differences: 1/1 mismatches [1] 7 - NA == NA ── Failure ('test_reorder_row.R:1253:5'): reordering row clustering results with other constraint produces correct results. ── Expected `match("4", reord$row_clusters)` to equal `match("2", orig$row_clusters)`. Differences: 1/1 mismatches [1] NA - 7 == NA ── Failure ('test_reorder_row.R:1294:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc` to equal `orig$out_parlist$rowc[c(1, 4, 3, 2)]`. Differences: Names: 2 string mismatches ── Failure ('test_reorder_row.R:1295:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc_cov[, 1]` to equal `orig$out_parlist$rowc_cov[c(1, 4, 3, 2), ]`. Differences: 2/4 mismatches (average diff: 0.0116) [2] 0.147 - 0.136 == 0.0116 [3] 0.136 - 0.147 == -0.0116 ── Failure ('test_reorder_row.R:1297:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_proportions` to equal `orig$row_cluster_proportions[c(1, 4, 3, 2)]`. Differences: 2/4 mismatches (average diff: 0.233) [2] 0.516 - 0.283 == 0.233 [3] 0.283 - 0.516 == -0.233 ── Failure ('test_reorder_row.R:1301:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parvec` to equal `reconstruct_out_parvec`. Differences: 4/20 mismatches (average diff: 0.0296) [2] -0.456 - -0.408 == -0.0476 [3] -0.408 - -0.456 == 0.0476 [10] 0.147 - 0.136 == 0.0116 [11] 0.136 - 0.147 == -0.0116 ── Failure ('test_reorder_row.R:1303:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_probs` to equal `orig$row_cluster_probs[, c(1, 4, 3, 2)]`. Differences: 60/120 mismatches (average diff: 0.233) [31] 0.537 - 0.283 == 0.254 [32] 0.491 - 0.284 == 0.207 [33] 0.518 - 0.283 == 0.235 [34] 0.510 - 0.283 == 0.227 [35] 0.505 - 0.283 == 0.222 [36] 0.534 - 0.282 == 0.252 [37] 0.532 - 0.284 == 0.248 [38] 0.530 - 0.283 == 0.248 [39] 0.457 - 0.277 == 0.180 ... ── Failure ('test_reorder_row.R:1306:5'): reordering row clustering results with other constraint produces correct results. ── Expected `match("2", reord$row_clusters)` to equal `match("4", orig$row_clusters)`. Differences: 1/1 mismatches [1] 1 - NA == NA ── Failure ('test_reorder_row.R:1307:5'): reordering row clustering results with other constraint produces correct results. ── Expected `match("3", reord$row_clusters)` to equal `match("3", orig$row_clusters)`. Differences: 1/1 mismatches [1] NA - 1 == NA ── Failure ('test_reorder_row.R:1311:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_members[[2]]` to equal `orig$row_cluster_members[[4]]`. Differences: Lengths differ: 30 is not 0 ── Failure ('test_reorder_row.R:1312:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_members[[3]]` to equal `orig$row_cluster_members[[3]]`. Differences: Lengths differ: 0 is not 30 ── Failure ('test_reorder_row.R:1320:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$rowc` to equal `orig$EMstatus$params_for_best_lli$rowc[c(1, 4, 3, 2)]`. Differences: 2/4 mismatches (average diff: 0.0476) [2] -0.456 - -0.408 == -0.0476 [3] -0.408 - -0.456 == 0.0476 ── Failure ('test_reorder_row.R:1321:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$rowc_cov[, 1]` to equal `orig$EMstatus$params_for_best_lli$rowc_cov[c(1, 4, 3, 2), ]`. Differences: 2/4 mismatches (average diff: 0.0116) [2] 0.147 - 0.136 == 0.0116 [3] 0.136 - 0.147 == -0.0116 ── Failure ('test_reorder_row.R:1323:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_every_iteration` to equal `...[]`. Differences: Attributes: < Component "dimnames": Component 2: 6 string mismatches > ── Failure ('test_reorder_row.R:1332:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc` to equal `orig$out_parlist$rowc`. Differences: Names: 2 string mismatches ── Failure ('test_reorder_row.R:1333:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parlist$rowc_cov` to equal `orig$out_parlist$rowc_cov`. Differences: 2/4 mismatches (average diff: 0.0116) [3] 0.136 - 0.147 == -0.0116 [4] 0.147 - 0.136 == 0.0116 ── Failure ('test_reorder_row.R:1335:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_proportions` to equal `orig$row_cluster_proportions`. Differences: 2/4 mismatches (average diff: 0.233) [3] 0.283 - 0.516 == -0.233 [4] 0.516 - 0.283 == 0.233 ── Failure ('test_reorder_row.R:1337:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$out_parvec` to equal `orig$out_parvec`. Differences: 4/20 mismatches (average diff: 0.0296) [3] -0.408 - -0.456 == 0.0476 [4] -0.456 - -0.408 == -0.0476 [11] 0.136 - 0.147 == -0.0116 [12] 0.147 - 0.136 == 0.0116 ── Failure ('test_reorder_row.R:1339:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_probs` to equal `orig$row_cluster_probs`. Differences: 60/120 mismatches (average diff: 0.233) [61] 0.283 - 0.537 == -0.254 [62] 0.284 - 0.491 == -0.207 [63] 0.283 - 0.518 == -0.235 [64] 0.283 - 0.510 == -0.227 [65] 0.283 - 0.505 == -0.222 [66] 0.282 - 0.534 == -0.252 [67] 0.284 - 0.532 == -0.248 [68] 0.283 - 0.530 == -0.248 [69] 0.277 - 0.457 == -0.180 ... ── Failure ('test_reorder_row.R:1341:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_clusters` to equal `orig$row_clusters`. Differences: 30/30 mismatches (average diff: 1) [1] 4 - 3 == 1 [2] 4 - 3 == 1 [3] 4 - 3 == 1 [4] 4 - 3 == 1 [5] 4 - 3 == 1 [6] 4 - 3 == 1 [7] 4 - 3 == 1 [8] 4 - 3 == 1 [9] 4 - 3 == 1 ... ── Failure ('test_reorder_row.R:1343:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$row_cluster_members` to equal `orig$row_cluster_members`. Differences: Component 3: Numeric: lengths (0, 30) differ Component 4: Numeric: lengths (30, 0) differ ── Failure ('test_reorder_row.R:1350:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$rowc` to equal `orig$EMstatus$params_for_best_lli$rowc`. Differences: 2/4 mismatches (average diff: 0.0476) [3] -0.408 - -0.456 == 0.0476 [4] -0.456 - -0.408 == -0.0476 ── Failure ('test_reorder_row.R:1351:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_for_best_lli$rowc_cov` to equal `orig$EMstatus$params_for_best_lli$rowc_cov`. Differences: 2/4 mismatches (average diff: 0.0116) [3] 0.136 - 0.147 == -0.0116 [4] 0.147 - 0.136 == 0.0116 ── Failure ('test_reorder_row.R:1353:5'): reordering row clustering results with other constraint produces correct results. ── Expected `reord$EMstatus$params_every_iteration` to equal `orig$EMstatus$params_every_iteration`. Differences: Attributes: < Component "dimnames": Component 2: 6 string mismatches > [ FAIL 130 | WARN 0 | SKIP 0 | PASS 3183 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [77s/78s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-noLD/clustord.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 6:28.38, 385.71 + 14.20