* using log directory ‘/data/gannet/ripley/R/packages/tests-noLD/changeRangeR.Rcheck’ * using R Under development (unstable) (2024-07-20 r86909) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (GCC) 14.1.0 GNU Fortran (GCC) 14.1.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘changeRangeR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘changeRangeR’ version ‘1.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘changeRangeR’ can be installed ... [15s/20s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [20s/27s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [28s/33s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [60s/68s] [60s/69s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(changeRangeR) To get started with multiple species, see the demo with vignette(package='changeRangeR') > > test_check("changeRangeR") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 20 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_mcpSDM.R:15:1'): (code run outside of `test_that()`) ─────────── Error in `ch.vec[[i.bestfit]]`: subscript out of bounds Backtrace: ▆ 1. └─changeRangeR::mcpSDM(p, xy, ch.orig, thr) at test_mcpSDM.R:15:1 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 20 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [210s/258s] OK * checking PDF version of manual ... [7s/11s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-noLD/changeRangeR.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 8:49.28, 391.45 + 35.42