* using log directory ‘/data/localhost/ripley/R/packages/tests-noLD/causalBatch.Rcheck’
* using R Under development (unstable) (2026-10-25 r90763)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-10-26 03:26:36 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘causalBatch/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘causalBatch’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘causalBatch’ can be installed ... [22s/47s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [7s/13s] OK
* checking whether the package can be loaded with stated dependencies ... [6s/12s] OK
* checking whether the package can be unloaded cleanly ... [6s/14s] OK
* checking whether the namespace can be loaded with stated dependencies ... [6s/13s] OK
* checking whether the namespace can be unloaded cleanly ... [7s/15s] OK
* checking loading without being on the library search path ... [7s/17s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [29s/46s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [25s/26s]
 [25s/26s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(causalBatch)
  > 
  > test_check("causalBatch")
  Adjusting for1covariate(s) or covariate level(s)
  Adjusting for1covariate(s) or covariate level(s)
  Adjusting for1covariate(s) or covariate level(s)
  # weights:  3 (2 variable)
  initial  value 130.311670 
  final  value 112.332932 
  converged
  # weights:  3 (2 variable)
  initial  value 121.300757 
  iter  10 value 51.975710
  final  value 51.975583 
  converged
  Saving _problems/test-causal_ccombat-71.R
  # weights:  3 (2 variable)
  initial  value 103.972077 
  final  value 98.371664 
  converged
  # weights:  3 (2 variable)
  initial  value 130.311670 
  final  value 123.342711 
  converged
  Loading required package: ks
  
  Attaching package: 'ks'
  
  The following object is masked from 'package:testthat':
  
      compare
  
  [ FAIL 1 | WARN 1 | SKIP 3 | PASS 47 ]
  
  ══ Skipped tests (3) ═══════════════════════════════════════════════════════════
  • On CRAN (3): 'test-causal_cdcorr.R:31:3', 'test-causal_cdcorr.R:46:3',
    'test-causal_cdcorr.R:89:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-causal_ccombat.R:70:3'): AIPW cComBat raises warning when few samples are retained ──
  Expected `cb.correct.aipw_cComBat(...)` to throw a warning.
  
  [ FAIL 1 | WARN 1 | SKIP 3 | PASS 47 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [93s/94s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-noLD/causalBatch.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 7:31.26, 279.30 + 20.28