* using log directory ‘/data/gannet/ripley/R/packages/tests-noLD/bbmle.Rcheck’
* using R Under development (unstable) (2024-04-20 r86457)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘bbmle/DESCRIPTION’ ... OK
* this is package ‘bbmle’ version ‘1.0.25.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bbmle’ can be installed ... [20s/42s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [27s/68s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [11s/12s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘BIC.R’
  Comparing ‘BIC.Rout’ to ‘BIC.Rout.save’ ... OK
  Running ‘ICtab.R’
  Comparing ‘ICtab.Rout’ to ‘ICtab.Rout.save’ ... OK
  Running ‘RUnit-tests.R’
  Running ‘binomtest1.R’
  Comparing ‘binomtest1.Rout’ to ‘binomtest1.Rout.save’ ... OK
  Running ‘boundstest.R’
  Running ‘controleval.R’
  Comparing ‘controleval.Rout’ to ‘controleval.Rout.save’ ... OK
  Running ‘eval.R’
  Comparing ‘eval.Rout’ to ‘eval.Rout.save’ ... OK
  Running ‘formulatest.R’ [6s/10s]
  Comparing ‘formulatest.Rout’ to ‘formulatest.Rout.save’ ...384c384
<        -0.0396814        -0.1010440         2.1273307         0.4047846 
---
>       -0.03968142       -0.10104397        2.12733072        0.40478459 
  Running ‘glmcomp.R’
  Comparing ‘glmcomp.Rout’ to ‘glmcomp.Rout.save’ ... OK
  Running ‘gradient_vecpar_profile.R’ [18s/26s]
  Comparing ‘gradient_vecpar_profile.Rout’ to ‘gradient_vecpar_profile.Rout.save’ ... OK
  Running ‘grtest1.R’
  Comparing ‘grtest1.Rout’ to ‘grtest1.Rout.save’ ... OK
  Running ‘impsamp.R’
  Running ‘methods.R’
  Comparing ‘methods.Rout’ to ‘methods.Rout.save’ ... OK
  Running ‘mortanal.R’
  Comparing ‘mortanal.Rout’ to ‘mortanal.Rout.save’ ... OK
  Running ‘optimize.R’
  Comparing ‘optimize.Rout’ to ‘optimize.Rout.save’ ... OK
  Running ‘optimizers.R’
  Comparing ‘optimizers.Rout’ to ‘optimizers.Rout.save’ ... OK
  Running ‘optimx.R’ [14s/18s]
  Comparing ‘optimx.Rout’ to ‘optimx.Rout.save’ ... OK
  Running ‘order.R’
  Comparing ‘order.Rout’ to ‘order.Rout.save’ ... OK
  Running ‘parscale.R’
  Comparing ‘parscale.Rout’ to ‘parscale.Rout.save’ ... OK
  Running ‘predict.R’
  Comparing ‘predict.Rout’ to ‘predict.Rout.save’ ... OK
  Running ‘prof_newmin.R’
  Running ‘prof_spec.R’
  Running ‘profbound.R’
  Comparing ‘profbound.Rout’ to ‘profbound.Rout.save’ ... OK
  Running ‘richards.R’ [18s/29s]
  Comparing ‘richards.Rout’ to ‘richards.Rout.save’ ... OK
  Running ‘startvals.R’
  Comparing ‘startvals.Rout’ to ‘startvals.Rout.save’ ... OK
  Running ‘startvals2.R’
  Comparing ‘startvals2.Rout’ to ‘startvals2.Rout.save’ ... OK
  Running ‘test-relist1.R’
  Comparing ‘test-relist1.Rout’ to ‘test-relist1.Rout.save’ ... OK
  Running ‘testbounds.R’
  Comparing ‘testbounds.Rout’ to ‘testbounds.Rout.save’ ...23,24d22
< 4: In mle2(y ~ dnorm(a + b * x, sd = exp(s)), start = list(a = 1, b = 1,  :
<   convergence failure: code=52 (ERROR: ABNORMAL_TERMINATION_IN_LNSRCH)
  Running ‘testderiv.R’
  Comparing ‘testderiv.Rout’ to ‘testderiv.Rout.save’ ... OK
  Running ‘testenv.R’
  Comparing ‘testenv.Rout’ to ‘testenv.Rout.save’ ... OK
  Running ‘testparpred.R’
  Comparing ‘testparpred.Rout’ to ‘testparpred.Rout.save’ ... OK
  Running ‘tmptest.R’
  Comparing ‘tmptest.Rout’ to ‘tmptest.Rout.save’ ... OK
  Running ‘update.R’
  Comparing ‘update.Rout’ to ‘update.Rout.save’ ... OK
 [171s/256s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [65s/108s] OK
* checking PDF version of manual ... [9s/14s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: OK

Time 10:39.46, 347.89 + 37.04