* using log directory ‘/data/gannet/ripley/R/packages/tests-noLD/MedianaDesigner.Rcheck’ * using R Under development (unstable) (2022-06-30 r82540) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘MedianaDesigner/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MedianaDesigner’ version ‘0.8’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MedianaDesigner’ can be installed ... [155s/284s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘MASS’ ‘pbkrtest’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [48s/102s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [75s/151s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.r’ [6m/12m] [6m/12m] ERROR Running the tests in ‘tests/testthat.r’ failed. Complete output: > library(testthat) > library(MedianaDesigner) > > test_check("MedianaDesigner") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 912 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error (test-ClustRand.r:63:5): Success runs ClustRand for additional cases ── Error: Relative cluster sizes in the control arm (control_cluster_proportion) are incorrectly specified. Backtrace: ▆ 1. └─MedianaDesigner::ClustRand(parametersNormal3ArmsRandomClusterSize) at test-ClustRand.r:63:4 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 912 ] Error: Test failures Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-noLD/MedianaDesigner.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 25:32.42, 697.47 + 30.21