* using log directory ‘/data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck’ * using R Under development (unstable) (2020-08-03 r78964) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘J4R/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘J4R’ version ‘1.0.8’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘J4R’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s/15s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [1s/14s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [49s/197s] [50s/198s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(J4R) Welcome to J4R! Please, make sure that Java (version 8 or later) is installed on your computer. For more information, visit https://sourceforge.net/p/repiceasource/wiki/J4R/ . > > test_check("J4R") [/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.262.b10-1.fc32.x86_64/jre/bin/java, -Xmx200m, -cp, j4r.jar, j4r.lang.codetranslator.REnvironment, -ports, 0:0, -wd, /data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/tests/testthat] Server started Shutting down application... [/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.262.b10-1.fc32.x86_64/jre/bin/java, -Xmx200m, -cp, j4r.jar, j4r.lang.codetranslator.REnvironment, -ports, 0:0, -wd, /data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/tests/testthat] Server started Shutting down application... [/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.262.b10-1.fc32.x86_64/jre/bin/java, -Xmx200m, -cp, j4r.jar, j4r.lang.codetranslator.REnvironment, -ports, 0:0, -wd, /data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/tests/testthat] Server started Shutting down application... [/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.262.b10-1.fc32.x86_64/jre/bin/java, -Xmx200m, -cp, j4r.jar:/data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/tests/testthat/javatests, j4r.lang.codetranslator.REnvironment, -ports, 0:0, -wd, /data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/tests/testthat] Server started Shutting down application... [/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.262.b10-1.fc32.x86_64/jre/bin/java, -Xmx200m, -cp, j4r.jar, j4r.lang.codetranslator.REnvironment, -ports, 0:0, -wd, /data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/tests/testthat] Server started Shutting down application... socket error: Connection refused [/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.262.b10-1.fc32.x86_64/jre/bin/java, -Xmx200m, -cp, j4r.jar, j4r.lang.codetranslator.REnvironment, -ports, 18013, -wd, /data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/tests/testthat] Server started Shutting down application... [/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.262.b10-1.fc32.x86_64/jre/bin/java, -Xmx200m, -cp, j4r.jar, j4r.lang.codetranslator.REnvironment, -ports, 0:0, -wd, /data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/tests/testthat] Server started [/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.262.b10-1.fc32.x86_64/jre/bin/java, -Xmx200m, -cp, j4r.jar, j4r.lang.codetranslator.REnvironment, -ports, 0:0, -wd, /data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/tests/testthat] Server started [1] 1000 [1] 1000 [1] 2000 [1] 1010 [1] 1010 [1] 2010 [1] 1010 [1] 2010 [1] 1010 [1] 2010 [1] 10 [1] 1000 [1] 2000 [1] 3000 [1] 4000 [1] 5000 [1] 6000 [1] 7000 [1] 8000 [1] 9000 [1] 10000 Shutting down application... [/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.262.b10-1.fc32.x86_64/jre/bin/java, -Xmx200m, -cp, j4r.jar, j4r.lang.codetranslator.REnvironment, -ports, 0:0, -wd, /data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/tests/testthat] Server started Shutting down application... [/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.262.b10-1.fc32.x86_64/jre/bin/java, -Xmx200m, -cp, j4r.jar, j4r.lang.codetranslator.REnvironment, -ports, 0, -wd, /data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/tests/testthat] Server started Shutting down application... [/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.262.b10-1.fc32.x86_64/jre/bin/java, -Xmx3000m, -cp, j4r.jar, j4r.lang.codetranslator.REnvironment, -ports, 0:0, -wd, /data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/tests/testthat] Server started Shutting down application... [/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.262.b10-1.fc32.x86_64/jre/bin/java, -Xmx200m, -cp, j4r.jar, j4r.lang.codetranslator.REnvironment, -ports, 0:0, -wd, /data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/tests/testthat] Server started ── 1. Failure: Testing numerical precision through log function (@testPerformanc diffR/diffJava == 1 not equal to TRUE. 1 element mismatch Shutting down application... [/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.262.b10-1.fc32.x86_64/jre/bin/java, -Xmx200m, -cp, j4r.jar, j4r.lang.codetranslator.REnvironment, -ports, 0:0, -wd, /data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/tests/testthat] Server started Shutting down application... ══ testthat results ═══════════════════════════════════════════════════════════ [ OK: 170 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] 1. Failure: Testing numerical precision through log function (@testPerformances.R#49) Error: testthat unit tests failed Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-noLD/J4R.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 4:51.57, 75.63 + 7.63