* using log directory ‘/data/gannet/ripley/R/packages/tests-noLD/INLAvaan.Rcheck’
* using R Under development (unstable) (2026-07-11 r90235)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
    GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-07-11 19:37:29 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘INLAvaan/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘INLAvaan’ version ‘0.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘INLAvaan’ can be installed ... [25s/30s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [62s/69s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [53s/55s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [395s/399s]
 [395s/400s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(INLAvaan)
  
  Attaching package: 'INLAvaan'
  
  The following object is masked from 'package:testthat':
  
      compare
  
  > 
  > test_check("INLAvaan")
  Saving _problems/test-optim_method-20.R
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 912 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • Skipping (2): 'test-binary.R:1:1', 'test-documentation.R:1:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-optim_method.R:20:3'): Method: nlminb with numerical grad ────
  Expected `fit@optim$dx` to equal `rep(0, length(coef(fit)))`.
  Differences:
       actual  | expected               
   [1] -0.0005 - 0.0000   [1]           
   [2] 0.0017  - 0.0000   [2]           
   [3] -0.0015 - 0.0000   [3]           
   [4] 0.0027  - 0.0000   [4]           
   [5] 0.0013  - 0.0000   [5]           
   [6] 0.0001  - 0.0000   [6]           
   [7] 0.0002  - 0.0000   [7]           
   [8] 0.0006  - 0.0000   [8]           
   [9] -0.0004 - 0.0000   [9]           
  [10] 0.0006  - 0.0000   [10]          
   ... ...       ...      and 3 more ...
  
  
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 912 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [39s/38s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-noLD/INLAvaan.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 11:40.69, 625.86 + 20.06