* using log directory ‘/data/gannet/ripley/R/packages/tests-noLD/DAFOT.Rcheck’
* using R Under development (unstable) (2020-02-19 r77832)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘DAFOT/DESCRIPTION’ ... OK
* this is package ‘DAFOT’ version ‘0.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DAFOT’ can be installed ... [6s/14s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘ape’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s/18s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... ERROR
Running examples in ‘DAFOT-Ex.R’ failed
The error most likely occurred in:

> ### Name: DAFOT
> ### Title: Detector of Active Flow on a Tree
> ### Aliases: DAFOT
> 
> ### ** Examples
> 
> library(ape)
> Tree=rtree(100)
> alphaP=c(rep(1,length(Tree$tip.label)),rep(0,Tree$Nnode))
> alphaQ=c(rep(1,length(Tree$tip.label)),rep(0,Tree$Nnode))
> DataPQ<-DataGenerating(100,100,alphaP,alphaQ,1000)
> DAFOT(DataPQ$P,DataPQ$Q,Tree,100,0.05)
Error in DAFOT(DataPQ$P, DataPQ$Q, Tree, 100, 0.05) : 
  all(apply(P, 2, sum) == 1) is not TRUE
Calls: DAFOT -> stopifnot
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/gannet/ripley/R/packages/tests-noLD/DAFOT.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:13.22, 47.67 + 6.01