* using log directory ‘/data/gannet/ripley/R/packages/tests-noLD/BrainNetTest.Rcheck’
* using R Under development (unstable) (2026-04-23 r89955)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
    GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-04-24 03:11:43 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘BrainNetTest/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BrainNetTest’ version ‘0.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BrainNetTest’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/20s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [7s/18s]
 [7s/19s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(BrainNetTest)
  > 
  > test_check("BrainNetTest")
  Saving _problems/test-compute_edge_pvalues-114.R
  [ FAIL 1 | WARN 0 | SKIP 14 | PASS 174 ]
  
  ══ Skipped tests (14) ══════════════════════════════════════════════════════════
  • On CRAN (14): 'test-brainnettest.R:107:3', 'test-get_critical_nodes.R:2:3',
    'test-get_critical_nodes.R:36:3', 'test-identify_critical_links.R:4:3',
    'test-identify_critical_links.R:70:3',
    'test-identify_critical_links.R:152:3',
    'test-identify_critical_links.R:178:3',
    'test-identify_critical_links.R:196:3',
    'test-identify_critical_links.R:216:3',
    'test-identify_critical_links.R:252:3',
    'test-identify_critical_links.R:267:3',
    'test-identify_critical_links.R:290:3', 'test-plot_critical_edges.R:20:3',
    'test-plot_critical_edges.R:32:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-compute_edge_pvalues.R:114:5'): compute_edge_pvalues returns a symmetric matrix for all adjust_methods ──
  Expected `all(p >= 0 & p <= 1)` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 1 | WARN 0 | SKIP 14 | PASS 174 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [22s/65s] OK
* checking PDF version of manual ... [7s/22s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-noLD/BrainNetTest.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:16.56, 67.34 + 10.49