==1716287== Memcheck, a memory error detector ==1716287== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1716287== Using Valgrind-3.16.1 and LibVEX; rerun with -h for copyright info ==1716287== Command: /data/blackswan/ripley/R/R-devel-vg/bin/exec/R --vanilla --no-echo ==1716287== > knitr::opts_chunk$set(collapse = TRUE, comment = "#>") > library(retrocombinator) > simulateEvolution() ==1716287== Invalid read of size 8 ==1716287== at 0x18851291: retrocombinator::Families::update(retrocombinator::Pool const&, unsigned long) (packages/tests-vg/retrocombinator/src/families.cpp:22) ==1716287== by 0x1885DB6F: retrocombinator::Simulation::simulate() (packages/tests-vg/retrocombinator/src/simulation.cpp:53) ==1716287== by 0x1885A70E: rcpp_simulate_evolution(std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, double, double, unsigned long, double, double, double, double, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, unsigned long, double, bool, unsigned long) (packages/tests-vg/retrocombinator/src/rcpp_simulation.cpp:46) ==1716287== by 0x18849EA9: _retrocombinator_rcpp_simulate_evolution (packages/tests-vg/retrocombinator/src/RcppExports.cpp:37) ==1716287== by 0x49D1B9: R_doDotCall (svn/R-devel/src/main/dotcode.c:731) ==1716287== by 0x49DA63: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==1716287== by 0x4D4846: bcEval (svn/R-devel/src/main/eval.c:7139) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== by 0x4F2D7D: R_execClosure (svn/R-devel/src/main/eval.c:1918) ==1716287== by 0x4F3A73: Rf_applyClosure (svn/R-devel/src/main/eval.c:1844) ==1716287== by 0x4E08FD: bcEval (svn/R-devel/src/main/eval.c:7107) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== Address 0x11039b48 is 0 bytes after a block of size 8 alloc'd ==1716287== at 0x483AE7D: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:342) ==1716287== by 0x1885F412: allocate (/usr/include/c++/10/ext/new_allocator.h:115) ==1716287== by 0x1885F412: allocate (/usr/include/c++/10/bits/alloc_traits.h:460) ==1716287== by 0x1885F412: _M_allocate (/usr/include/c++/10/bits/stl_vector.h:346) ==1716287== by 0x1885F412: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, unsigned long const&) (/usr/include/c++/10/bits/vector.tcc:440) ==1716287== by 0x1885E378: push_back (/usr/include/c++/10/bits/stl_vector.h:1198) ==1716287== by 0x1885E378: retrocombinator::Utils::select_representatives(std::vector, std::allocator >, std::allocator, std::allocator > > >) (packages/tests-vg/retrocombinator/src/utilities.cpp:93) ==1716287== by 0x188511C9: retrocombinator::Families::update(retrocombinator::Pool const&, unsigned long) (packages/tests-vg/retrocombinator/src/families.cpp:18) ==1716287== by 0x1885DB6F: retrocombinator::Simulation::simulate() (packages/tests-vg/retrocombinator/src/simulation.cpp:53) ==1716287== by 0x1885A70E: rcpp_simulate_evolution(std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, double, double, unsigned long, double, double, double, double, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, unsigned long, double, bool, unsigned long) (packages/tests-vg/retrocombinator/src/rcpp_simulation.cpp:46) ==1716287== by 0x18849EA9: _retrocombinator_rcpp_simulate_evolution (packages/tests-vg/retrocombinator/src/RcppExports.cpp:37) ==1716287== by 0x49D1B9: R_doDotCall (svn/R-devel/src/main/dotcode.c:731) ==1716287== by 0x49DA63: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==1716287== by 0x4D4846: bcEval (svn/R-devel/src/main/eval.c:7139) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== by 0x4F2D7D: R_execClosure (svn/R-devel/src/main/eval.c:1918) ==1716287== ==1716287== Conditional jump or move depends on uninitialised value(s) ==1716287== at 0x1885363B: retrocombinator::Output::print_family_dist(unsigned long, retrocombinator::Families const&) (packages/tests-vg/retrocombinator/src/output.cpp:110) ==1716287== by 0x1885DB84: retrocombinator::Simulation::simulate() (packages/tests-vg/retrocombinator/src/simulation.cpp:54) ==1716287== by 0x1885A70E: rcpp_simulate_evolution(std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, double, double, unsigned long, double, double, double, double, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, unsigned long, double, bool, unsigned long) (packages/tests-vg/retrocombinator/src/rcpp_simulation.cpp:46) ==1716287== by 0x18849EA9: _retrocombinator_rcpp_simulate_evolution (packages/tests-vg/retrocombinator/src/RcppExports.cpp:37) ==1716287== by 0x49D1B9: R_doDotCall (svn/R-devel/src/main/dotcode.c:731) ==1716287== by 0x49DA63: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==1716287== by 0x4D4846: bcEval (svn/R-devel/src/main/eval.c:7139) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== by 0x4F2D7D: R_execClosure (svn/R-devel/src/main/eval.c:1918) ==1716287== by 0x4F3A73: Rf_applyClosure (svn/R-devel/src/main/eval.c:1844) ==1716287== by 0x4E08FD: bcEval (svn/R-devel/src/main/eval.c:7107) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== Uninitialised value was created by a heap allocation ==1716287== at 0x483AE7D: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:342) ==1716287== by 0x18851CB2: allocate (/usr/include/c++/10/ext/new_allocator.h:115) ==1716287== by 0x18851CB2: allocate (/usr/include/c++/10/bits/alloc_traits.h:460) ==1716287== by 0x18851CB2: _M_allocate (/usr/include/c++/10/bits/stl_vector.h:346) ==1716287== by 0x18851CB2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, unsigned long&&) (/usr/include/c++/10/bits/vector.tcc:440) ==1716287== by 0x1885157B: emplace_back (/usr/include/c++/10/bits/vector.tcc:121) ==1716287== by 0x1885157B: retrocombinator::Families::update(retrocombinator::Pool const&, unsigned long) (packages/tests-vg/retrocombinator/src/families.cpp:36) ==1716287== by 0x1885DB6F: retrocombinator::Simulation::simulate() (packages/tests-vg/retrocombinator/src/simulation.cpp:53) ==1716287== by 0x1885A70E: rcpp_simulate_evolution(std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, double, double, unsigned long, double, double, double, double, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, unsigned long, double, bool, unsigned long) (packages/tests-vg/retrocombinator/src/rcpp_simulation.cpp:46) ==1716287== by 0x18849EA9: _retrocombinator_rcpp_simulate_evolution (packages/tests-vg/retrocombinator/src/RcppExports.cpp:37) ==1716287== by 0x49D1B9: R_doDotCall (svn/R-devel/src/main/dotcode.c:731) ==1716287== by 0x49DA63: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==1716287== by 0x4D4846: bcEval (svn/R-devel/src/main/eval.c:7139) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== by 0x4F2D7D: R_execClosure (svn/R-devel/src/main/eval.c:1918) ==1716287== by 0x4F3A73: Rf_applyClosure (svn/R-devel/src/main/eval.c:1844) ==1716287== ==1716287== Invalid read of size 8 ==1716287== at 0x18853637: retrocombinator::Output::print_family_dist(unsigned long, retrocombinator::Families const&) (packages/tests-vg/retrocombinator/src/output.cpp:110) ==1716287== by 0x1885DB84: retrocombinator::Simulation::simulate() (packages/tests-vg/retrocombinator/src/simulation.cpp:54) ==1716287== by 0x1885A70E: rcpp_simulate_evolution(std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, double, double, unsigned long, double, double, double, double, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, unsigned long, double, bool, unsigned long) (packages/tests-vg/retrocombinator/src/rcpp_simulation.cpp:46) ==1716287== by 0x18849EA9: _retrocombinator_rcpp_simulate_evolution (packages/tests-vg/retrocombinator/src/RcppExports.cpp:37) ==1716287== by 0x49D1B9: R_doDotCall (svn/R-devel/src/main/dotcode.c:731) ==1716287== by 0x49DA63: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==1716287== by 0x4D4846: bcEval (svn/R-devel/src/main/eval.c:7139) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== by 0x4F2D7D: R_execClosure (svn/R-devel/src/main/eval.c:1918) ==1716287== by 0x4F3A73: Rf_applyClosure (svn/R-devel/src/main/eval.c:1844) ==1716287== by 0x4E08FD: bcEval (svn/R-devel/src/main/eval.c:7107) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== Address 0x108055f0 is 0 bytes after a block of size 32 alloc'd ==1716287== at 0x483AE7D: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:342) ==1716287== by 0x18851CB2: allocate (/usr/include/c++/10/ext/new_allocator.h:115) ==1716287== by 0x18851CB2: allocate (/usr/include/c++/10/bits/alloc_traits.h:460) ==1716287== by 0x18851CB2: _M_allocate (/usr/include/c++/10/bits/stl_vector.h:346) ==1716287== by 0x18851CB2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, unsigned long&&) (/usr/include/c++/10/bits/vector.tcc:440) ==1716287== by 0x1885157B: emplace_back (/usr/include/c++/10/bits/vector.tcc:121) ==1716287== by 0x1885157B: retrocombinator::Families::update(retrocombinator::Pool const&, unsigned long) (packages/tests-vg/retrocombinator/src/families.cpp:36) ==1716287== by 0x1885DB6F: retrocombinator::Simulation::simulate() (packages/tests-vg/retrocombinator/src/simulation.cpp:53) ==1716287== by 0x1885A70E: rcpp_simulate_evolution(std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, double, double, unsigned long, double, double, double, double, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, unsigned long, double, bool, unsigned long) (packages/tests-vg/retrocombinator/src/rcpp_simulation.cpp:46) ==1716287== by 0x18849EA9: _retrocombinator_rcpp_simulate_evolution (packages/tests-vg/retrocombinator/src/RcppExports.cpp:37) ==1716287== by 0x49D1B9: R_doDotCall (svn/R-devel/src/main/dotcode.c:731) ==1716287== by 0x49DA63: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==1716287== by 0x4D4846: bcEval (svn/R-devel/src/main/eval.c:7139) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== by 0x4F2D7D: R_execClosure (svn/R-devel/src/main/eval.c:1918) ==1716287== by 0x4F3A73: Rf_applyClosure (svn/R-devel/src/main/eval.c:1844) ==1716287== ==1716287== Invalid read of size 8 ==1716287== at 0x1885369E: operator<< (/usr/include/c++/10/ostream:171) ==1716287== by 0x1885369E: retrocombinator::Output::print_family_dist(unsigned long, retrocombinator::Families const&) (packages/tests-vg/retrocombinator/src/output.cpp:111) ==1716287== by 0x1885DB84: retrocombinator::Simulation::simulate() (packages/tests-vg/retrocombinator/src/simulation.cpp:54) ==1716287== by 0x1885A70E: rcpp_simulate_evolution(std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, double, double, unsigned long, double, double, double, double, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, unsigned long, double, bool, unsigned long) (packages/tests-vg/retrocombinator/src/rcpp_simulation.cpp:46) ==1716287== by 0x18849EA9: _retrocombinator_rcpp_simulate_evolution (packages/tests-vg/retrocombinator/src/RcppExports.cpp:37) ==1716287== by 0x49D1B9: R_doDotCall (svn/R-devel/src/main/dotcode.c:731) ==1716287== by 0x49DA63: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==1716287== by 0x4D4846: bcEval (svn/R-devel/src/main/eval.c:7139) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== by 0x4F2D7D: R_execClosure (svn/R-devel/src/main/eval.c:1918) ==1716287== by 0x4F3A73: Rf_applyClosure (svn/R-devel/src/main/eval.c:1844) ==1716287== by 0x4E08FD: bcEval (svn/R-devel/src/main/eval.c:7107) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== Address 0x108055f8 is 8 bytes after a block of size 32 alloc'd ==1716287== at 0x483AE7D: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:342) ==1716287== by 0x18851CB2: allocate (/usr/include/c++/10/ext/new_allocator.h:115) ==1716287== by 0x18851CB2: allocate (/usr/include/c++/10/bits/alloc_traits.h:460) ==1716287== by 0x18851CB2: _M_allocate (/usr/include/c++/10/bits/stl_vector.h:346) ==1716287== by 0x18851CB2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, unsigned long&&) (/usr/include/c++/10/bits/vector.tcc:440) ==1716287== by 0x1885157B: emplace_back (/usr/include/c++/10/bits/vector.tcc:121) ==1716287== by 0x1885157B: retrocombinator::Families::update(retrocombinator::Pool const&, unsigned long) (packages/tests-vg/retrocombinator/src/families.cpp:36) ==1716287== by 0x1885DB6F: retrocombinator::Simulation::simulate() (packages/tests-vg/retrocombinator/src/simulation.cpp:53) ==1716287== by 0x1885A70E: rcpp_simulate_evolution(std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, double, double, unsigned long, double, double, double, double, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, unsigned long, double, bool, unsigned long) (packages/tests-vg/retrocombinator/src/rcpp_simulation.cpp:46) ==1716287== by 0x18849EA9: _retrocombinator_rcpp_simulate_evolution (packages/tests-vg/retrocombinator/src/RcppExports.cpp:37) ==1716287== by 0x49D1B9: R_doDotCall (svn/R-devel/src/main/dotcode.c:731) ==1716287== by 0x49DA63: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==1716287== by 0x4D4846: bcEval (svn/R-devel/src/main/eval.c:7139) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== by 0x4F2D7D: R_execClosure (svn/R-devel/src/main/eval.c:1918) ==1716287== by 0x4F3A73: Rf_applyClosure (svn/R-devel/src/main/eval.c:1844) ==1716287== ==1716287== Use of uninitialised value of size 8 ==1716287== at 0x7364A4B: ??? (in /usr/lib64/libstdc++.so.6.0.28) ==1716287== by 0x7366C6D: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib64/libstdc++.so.6.0.28) ==1716287== by 0x7375FBE: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib64/libstdc++.so.6.0.28) ==1716287== by 0x188536A6: operator<< (/usr/include/c++/10/ostream:171) ==1716287== by 0x188536A6: retrocombinator::Output::print_family_dist(unsigned long, retrocombinator::Families const&) (packages/tests-vg/retrocombinator/src/output.cpp:111) ==1716287== by 0x1885DB84: retrocombinator::Simulation::simulate() (packages/tests-vg/retrocombinator/src/simulation.cpp:54) ==1716287== by 0x1885A70E: rcpp_simulate_evolution(std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, double, double, unsigned long, double, double, double, double, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, unsigned long, double, bool, unsigned long) (packages/tests-vg/retrocombinator/src/rcpp_simulation.cpp:46) ==1716287== by 0x18849EA9: _retrocombinator_rcpp_simulate_evolution (packages/tests-vg/retrocombinator/src/RcppExports.cpp:37) ==1716287== by 0x49D1B9: R_doDotCall (svn/R-devel/src/main/dotcode.c:731) ==1716287== by 0x49DA63: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==1716287== by 0x4D4846: bcEval (svn/R-devel/src/main/eval.c:7139) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== by 0x4F2D7D: R_execClosure (svn/R-devel/src/main/eval.c:1918) ==1716287== Uninitialised value was created by a heap allocation ==1716287== at 0x483AE7D: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:342) ==1716287== by 0x18851CB2: allocate (/usr/include/c++/10/ext/new_allocator.h:115) ==1716287== by 0x18851CB2: allocate (/usr/include/c++/10/bits/alloc_traits.h:460) ==1716287== by 0x18851CB2: _M_allocate (/usr/include/c++/10/bits/stl_vector.h:346) ==1716287== by 0x18851CB2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, unsigned long&&) (/usr/include/c++/10/bits/vector.tcc:440) ==1716287== by 0x1885157B: emplace_back (/usr/include/c++/10/bits/vector.tcc:121) ==1716287== by 0x1885157B: retrocombinator::Families::update(retrocombinator::Pool const&, unsigned long) (packages/tests-vg/retrocombinator/src/families.cpp:36) ==1716287== by 0x1885DB6F: retrocombinator::Simulation::simulate() (packages/tests-vg/retrocombinator/src/simulation.cpp:53) ==1716287== by 0x1885A70E: rcpp_simulate_evolution(std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, double, double, unsigned long, double, double, double, double, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, unsigned long, double, bool, unsigned long) (packages/tests-vg/retrocombinator/src/rcpp_simulation.cpp:46) ==1716287== by 0x18849EA9: _retrocombinator_rcpp_simulate_evolution (packages/tests-vg/retrocombinator/src/RcppExports.cpp:37) ==1716287== by 0x49D1B9: R_doDotCall (svn/R-devel/src/main/dotcode.c:731) ==1716287== by 0x49DA63: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==1716287== by 0x4D4846: bcEval (svn/R-devel/src/main/eval.c:7139) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== by 0x4F2D7D: R_execClosure (svn/R-devel/src/main/eval.c:1918) ==1716287== by 0x4F3A73: Rf_applyClosure (svn/R-devel/src/main/eval.c:1844) ==1716287== ==1716287== Conditional jump or move depends on uninitialised value(s) ==1716287== at 0x7364A5D: ??? (in /usr/lib64/libstdc++.so.6.0.28) ==1716287== by 0x7366C6D: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib64/libstdc++.so.6.0.28) ==1716287== by 0x7375FBE: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib64/libstdc++.so.6.0.28) ==1716287== by 0x188536A6: operator<< (/usr/include/c++/10/ostream:171) ==1716287== by 0x188536A6: retrocombinator::Output::print_family_dist(unsigned long, retrocombinator::Families const&) (packages/tests-vg/retrocombinator/src/output.cpp:111) ==1716287== by 0x1885DB84: retrocombinator::Simulation::simulate() (packages/tests-vg/retrocombinator/src/simulation.cpp:54) ==1716287== by 0x1885A70E: rcpp_simulate_evolution(std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, double, double, unsigned long, double, double, double, double, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, unsigned long, double, bool, unsigned long) (packages/tests-vg/retrocombinator/src/rcpp_simulation.cpp:46) ==1716287== by 0x18849EA9: _retrocombinator_rcpp_simulate_evolution (packages/tests-vg/retrocombinator/src/RcppExports.cpp:37) ==1716287== by 0x49D1B9: R_doDotCall (svn/R-devel/src/main/dotcode.c:731) ==1716287== by 0x49DA63: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==1716287== by 0x4D4846: bcEval (svn/R-devel/src/main/eval.c:7139) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== by 0x4F2D7D: R_execClosure (svn/R-devel/src/main/eval.c:1918) ==1716287== Uninitialised value was created by a heap allocation ==1716287== at 0x483AE7D: operator new(unsigned long) (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:342) ==1716287== by 0x18851CB2: allocate (/usr/include/c++/10/ext/new_allocator.h:115) ==1716287== by 0x18851CB2: allocate (/usr/include/c++/10/bits/alloc_traits.h:460) ==1716287== by 0x18851CB2: _M_allocate (/usr/include/c++/10/bits/stl_vector.h:346) ==1716287== by 0x18851CB2: void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, unsigned long&&) (/usr/include/c++/10/bits/vector.tcc:440) ==1716287== by 0x1885157B: emplace_back (/usr/include/c++/10/bits/vector.tcc:121) ==1716287== by 0x1885157B: retrocombinator::Families::update(retrocombinator::Pool const&, unsigned long) (packages/tests-vg/retrocombinator/src/families.cpp:36) ==1716287== by 0x1885DB6F: retrocombinator::Simulation::simulate() (packages/tests-vg/retrocombinator/src/simulation.cpp:53) ==1716287== by 0x1885A70E: rcpp_simulate_evolution(std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, double, double, unsigned long, double, double, double, double, unsigned long, unsigned long, double, std::__cxx11::basic_string, std::allocator >, unsigned long, unsigned long, unsigned long, unsigned long, double, bool, unsigned long) (packages/tests-vg/retrocombinator/src/rcpp_simulation.cpp:46) ==1716287== by 0x18849EA9: _retrocombinator_rcpp_simulate_evolution (packages/tests-vg/retrocombinator/src/RcppExports.cpp:37) ==1716287== by 0x49D1B9: R_doDotCall (svn/R-devel/src/main/dotcode.c:731) ==1716287== by 0x49DA63: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==1716287== by 0x4D4846: bcEval (svn/R-devel/src/main/eval.c:7139) ==1716287== by 0x4F1357: Rf_eval (svn/R-devel/src/main/eval.c:748) ==1716287== by 0x4F2D7D: R_execClosure (svn/R-devel/src/main/eval.c:1918) ==1716287== by 0x4F3A73: Rf_applyClosure (svn/R-devel/src/main/eval.c:1844) ==1716287== [1] "simulationOutput.out" > data <- parseSimulationOutput("simulationOutput.out") > print(names(data$params)) [1] "SequenceParams_sequenceLength" [2] "SequenceParams_initialSequence" [3] "SequenceParams_numInitialCopies" [4] "ActivityParams_lengthCriticalRegion" [5] "ActivityParams_probInactiveWhenMutated" [6] "MutationParams_model" [7] "BurstParams_burstProbability" [8] "BurstParams_burstMean" [9] "BurstParams_maxTotalCopies" [10] "RecombParams_recombMean" [11] "RecombParams_recombSimilarity" [12] "SelectionParams_selectionThreshold" [13] "FamilyParams_familyCoherence" [14] "FamilyParams_maxFamilyRepresentatives" [15] "SimulationParams_numSteps" [16] "SimulationParams_timePerStep" [17] "OutputParams_outputFileName" [18] "OutputParams_outputNumInitialDistance" [19] "OutputParams_outputNumPairwiseDistance" [20] "OutputParams_outputNumFamilyLabels" [21] "OutputParams_outputNumFamilyMatrix" [22] "OutputParams_outputMinPairwiseSimilarity" [23] "SeedParams_toSeed" [24] "SeedParams_seed" > print(colnames(data$sequences)) [1] "step" "realTime" "sequenceId" [4] "parentMain" "parentOther" "distanceToInitial" [7] "isActive" > print(colnames(data$pairwise)) [1] "step" "realTime" "sequenceId1" "sequenceId2" [5] "distancePairwise" > print(colnames(data$familyRepresentatives)) [1] "step" "realTime" "familyId" "creationTime" "sequenceId" > print(colnames(data$familyPairwise)) [1] "step" "realTime" "familyId1" "familyId2" [5] "distancePairwise" > plotEvolution(data, "initial") Warning: `guides( = FALSE)` is deprecated. Please use `guides( = "none")` instead. > plotEvolution(data, "pairwise") Warning: `guides( = FALSE)` is deprecated. Please use `guides( = "none")` instead. > plotEvolution(data, "families") > sequenceParams <- SequenceParams(initialSequence = "TCAGTCAGTCAGTCAGTGTG", + numInitialCopies = 10) > activityParams <- ActivityParams(lengthCriticalRegion = 2, + probInactiveWhenMutated = 0.1) > mutationParams <- MutationParams(model = "F81") > burstParams <- BurstParams(burstProbability = 0.2, + burstMean = 2, maxTotalCopies = 40) > recombParams <- RecombParams(recombMean = 2, recombSimilarity = 0.85) > selectionParams <- SelectionParams(selectionThreshold = 0.25) > familyParams <- FamilyParams(familyCoherence = 0.65, + maxFamilyRepresentatives = 15) > simulationParams <- SimulationParams(numSteps = 35, + timePerStep = 1.5) > outputParams <- OutputParams(outputFilename = "simulationExampleParameters.out", + outputNumInitialDistance = 5, outputNumPairwiseDistance = 5, .... [TRUNCATED] > seedParams <- SeedParams(toSeed = TRUE, seedForRNG = 1) > simulateEvolution(sequenceParams = sequenceParams, + activityParams = activityParams, mutationParams = mutationParams, + burstParams = bur .... [TRUNCATED] [1] "simulationExampleParameters.out" *** Run successfully completed *** > proc.time() user system elapsed 193.265 0.838 193.620 ==1716287== ==1716287== HEAP SUMMARY: ==1716287== in use at exit: 105,623,205 bytes in 25,043 blocks ==1716287== total heap usage: 771,337 allocs, 746,294 frees, 600,600,035 bytes allocated ==1716287== ==1716287== 16 bytes in 1 blocks are possibly lost in loss record 107 of 2,538 ==1716287== at 0x483CAE9: calloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:760) ==1716287== by 0x17DE69B0: g_malloc0 (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D63F56: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D675D6: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D49F5E: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43127: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40151CD: _dl_open (in /usr/lib64/ld-2.31.so) ==1716287== ==1716287== 16 bytes in 1 blocks are possibly lost in loss record 108 of 2,538 ==1716287== at 0x483A747: malloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:306) ==1716287== by 0x483CD32: realloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:834) ==1716287== by 0x17DE6A0F: g_realloc (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D63EDC: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D675D6: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D49F5E: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43127: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== ==1716287== 16 bytes in 1 blocks are possibly lost in loss record 109 of 2,538 ==1716287== at 0x483CAE9: calloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:760) ==1716287== by 0x17DE69B0: g_malloc0 (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D63F56: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D675D6: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D49FC1: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43127: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40151CD: _dl_open (in /usr/lib64/ld-2.31.so) ==1716287== ==1716287== 16 bytes in 1 blocks are possibly lost in loss record 110 of 2,538 ==1716287== at 0x483A747: malloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:306) ==1716287== by 0x483CD32: realloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:834) ==1716287== by 0x17DE6A0F: g_realloc (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D63EDC: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D675D6: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D49FC1: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43127: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== ==1716287== 16 bytes in 1 blocks are possibly lost in loss record 111 of 2,538 ==1716287== at 0x483CAE9: calloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:760) ==1716287== by 0x17DE69B0: g_malloc0 (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D63F56: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D675D6: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D5394F: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43131: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40151CD: _dl_open (in /usr/lib64/ld-2.31.so) ==1716287== ==1716287== 16 bytes in 1 blocks are possibly lost in loss record 112 of 2,538 ==1716287== at 0x483A747: malloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:306) ==1716287== by 0x483CD32: realloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:834) ==1716287== by 0x17DE6A0F: g_realloc (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D63EDC: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D675D6: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D5394F: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43131: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== ==1716287== 16 bytes in 1 blocks are possibly lost in loss record 113 of 2,538 ==1716287== at 0x483CAE9: calloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:760) ==1716287== by 0x17DE69B0: g_malloc0 (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D63F56: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D675D6: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D4E7EB: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43136: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40151CD: _dl_open (in /usr/lib64/ld-2.31.so) ==1716287== ==1716287== 16 bytes in 1 blocks are possibly lost in loss record 114 of 2,538 ==1716287== at 0x483A747: malloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:306) ==1716287== by 0x483CD32: realloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:834) ==1716287== by 0x17DE6A0F: g_realloc (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D63EDC: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D675D6: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D4E7EB: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43136: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== ==1716287== 96 bytes in 1 blocks are possibly lost in loss record 278 of 2,538 ==1716287== at 0x483CAE9: calloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:760) ==1716287== by 0x17DE69B0: g_malloc0 (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D62C8F: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D6336E: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D4304E: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40151CD: _dl_open (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4EB939B: dlopen_doit (in /usr/lib64/libdl-2.31.so) ==1716287== ==1716287== 96 bytes in 1 blocks are possibly lost in loss record 279 of 2,538 ==1716287== at 0x483CAE9: calloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:760) ==1716287== by 0x17DE69B0: g_malloc0 (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D62C8F: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D6336E: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D675C8: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D49F5E: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43127: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== ==1716287== 96 bytes in 1 blocks are possibly lost in loss record 280 of 2,538 ==1716287== at 0x483CAE9: calloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:760) ==1716287== by 0x17DE69B0: g_malloc0 (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D62C8F: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D6336E: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D675C8: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D49FC1: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43127: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== ==1716287== 96 bytes in 1 blocks are possibly lost in loss record 281 of 2,538 ==1716287== at 0x483CAE9: calloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:760) ==1716287== by 0x17DE69B0: g_malloc0 (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D62C8F: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D6336E: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D675C8: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D5394F: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43131: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== ==1716287== 96 bytes in 1 blocks are possibly lost in loss record 282 of 2,538 ==1716287== at 0x483CAE9: calloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:760) ==1716287== by 0x17DE69B0: g_malloc0 (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D62C8F: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D6336E: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D675C8: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D4E7EB: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43136: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== ==1716287== 132 bytes in 1 blocks are possibly lost in loss record 292 of 2,538 ==1716287== at 0x483CAE9: calloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:760) ==1716287== by 0x17DE69B0: g_malloc0 (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D64294: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D67659: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D49F5E: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43127: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40151CD: _dl_open (in /usr/lib64/ld-2.31.so) ==1716287== ==1716287== 132 bytes in 1 blocks are possibly lost in loss record 293 of 2,538 ==1716287== at 0x483CAE9: calloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:760) ==1716287== by 0x17DE69B0: g_malloc0 (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D64294: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D67659: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D49FC1: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43127: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40151CD: _dl_open (in /usr/lib64/ld-2.31.so) ==1716287== ==1716287== 148 bytes in 1 blocks are possibly lost in loss record 298 of 2,538 ==1716287== at 0x483CAE9: calloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:760) ==1716287== by 0x17DE69B0: g_malloc0 (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D6409A: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D67659: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D5394F: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43131: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40151CD: _dl_open (in /usr/lib64/ld-2.31.so) ==1716287== ==1716287== 148 bytes in 1 blocks are possibly lost in loss record 299 of 2,538 ==1716287== at 0x483CAE9: calloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:760) ==1716287== by 0x17DE69B0: g_malloc0 (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D6409A: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D67659: g_type_register_fundamental (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D4E7EB: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D43136: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40151CD: _dl_open (in /usr/lib64/ld-2.31.so) ==1716287== ==1716287== 184 bytes in 1 blocks are possibly lost in loss record 308 of 2,538 ==1716287== at 0x483CCE8: realloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:834) ==1716287== by 0x17DE6A0F: g_realloc (in /usr/lib64/libglib-2.0.so.0.6400.6) ==1716287== by 0x17D62C04: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D6787C: g_type_register_static (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D55612: g_param_type_register_static (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D580DA: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x17D4313B: ??? (in /usr/lib64/libgobject-2.0.so.0.6400.6) ==1716287== by 0x4011801: call_init.part.0 (in /usr/lib64/ld-2.31.so) ==1716287== by 0x4011910: _dl_init (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF74: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== by 0x40159A7: dl_open_worker (in /usr/lib64/ld-2.31.so) ==1716287== by 0x554FF17: _dl_catch_exception (in /usr/lib64/libc-2.31.so) ==1716287== ==1716287== LEAK SUMMARY: ==1716287== definitely lost: 0 bytes in 0 blocks ==1716287== indirectly lost: 0 bytes in 0 blocks ==1716287== possibly lost: 1,352 bytes in 18 blocks ==1716287== still reachable: 105,621,853 bytes in 25,025 blocks ==1716287== of which reachable via heuristic: ==1716287== newarray : 1,536 bytes in 16 blocks ==1716287== suppressed: 0 bytes in 0 blocks ==1716287== Reachable blocks (those to which a pointer was found) are not shown. ==1716287== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1716287== ==1716287== For lists of detected and suppressed errors, rerun with: -s ==1716287== ERROR SUMMARY: 1274 errors from 24 contexts (suppressed: 0 from 0)