* using log directory ‘/data/blackswan/ripley/R/packages/tests-vg/refGenome.Rcheck’
* using R Under development (unstable) (2020-01-11 r77654)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--use-valgrind --no-stop-on-test-error’
* checking for file ‘refGenome/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘refGenome’ version ‘1.7.7’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package ‘refGenome’ can be installed ... [13s/13s] OK
* checking package directory ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [182s/183s] OK
* checking tests ... [137s/138s] OK
  Running ‘test-all.R’ [137s/137s]
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... [178s/179s] OK
  ‘readGTF.Rnw’ using ‘UTF-8’... [22s/22s] OK
  ‘refGenome.Rnw’ using ‘UTF-8’... [156s/157s] OK
* checking re-building of vignette outputs ... OK
* DONE
Status: OK