==3638413== Memcheck, a memory error detector ==3638413== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==3638413== Using Valgrind-3.24.0 and LibVEX; rerun with -h for copyright info ==3638413== Command: /data/blackswan/ripley/R/R-devel-vg/bin/exec/R -f varcorr.R --restore --save --no-readline --vanilla ==3638413== R Under development (unstable) (2026-07-02 r90204) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(lme4) Loading required package: Matrix > > if (.Platform$OS.type != "windows") { + data(Orthodont, package="nlme") + fm1 <- lmer(distance ~ age + (age|Subject), data = Orthodont) + VarCorr(fm1) + + fm2ML <- lmer(diameter ~ 1 + (1|plate) + (1|sample), Penicillin, REML=0) + VarCorr(fm2ML) + + gm1 <- glmer(cbind(incidence,size-incidence) ~ period + (1|herd),data=cbpp, + family=binomial) + VarCorr(gm1) + + cbpp$obs <- factor(seq(nrow(cbpp))) + gm2 <- update(gm1,.~.+(1|obs)) + VarCorr(gm2) + + if (FALSE) { + ## testing lme4/lme4 incompatibility + ## library(lme4) + VarCorr(fm1) + lme4:::VarCorr.merMod(fm1) ## OK + } + } ## skip on windows (for speed) ==3638413== Invalid read of size 8 ==3638413== at 0x247DA545: coeff (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:925) ==3638413== by 0x247DA545: assignCoeff (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654) ==3638413== by 0x247DA545: assignCoeffByOuterInner (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:668) ==3638413== by 0x247DA545: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:347) ==3638413== by 0x247DA545: call_dense_assignment_loop >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785) ==3638413== by 0x247DA545: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954) ==3638413== by 0x247DA545: call_assignment_no_alias >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3638413== by 0x247DA545: call_assignment >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858) ==3638413== by 0x247DA545: call_assignment >, Eigen::Product > >, Eigen::Map >, 1> > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836) ==3638413== by 0x247DA545: operator= > >, Eigen::Map >, 1> > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66) ==3638413== by 0x247DA545: lme4::merPredD::updateXwts(Eigen::Array const&) (packages/tests-vg/lme4/src/predModule.cpp:221) ==3638413== by 0x247B2A2F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:274) ==3638413== by 0x247B2A2F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3638413== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3638413== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3638413== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3638413== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3638413== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3638413== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3638413== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3638413== by 0x4F96BC: do_set (svn/R-devel/src/main/eval.c:3585) ==3638413== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3638413== Address 0x1c604010 is 48 bytes inside a block of size 1,840 free'd ==3638413== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3638413== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3638413== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3638413== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3638413== by 0x53830B: CONS_NR (svn/R-devel/src/main/memory.c:2519) ==3638413== by 0x52D9A2: Rf_matchArgs_NR (svn/R-devel/src/main/match.c:196) ==3638413== by 0x52E1B8: Rf_matchArgs_RC (svn/R-devel/src/main/match.c:392) ==3638413== by 0x4D7080: make_applyClosure_env (svn/R-devel/src/main/eval.c:2261) ==3638413== by 0x4F7251: applyClosure_core (svn/R-devel/src/main/eval.c:2304) ==3638413== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3638413== by 0x4C046C: getActiveValue (svn/R-devel/src/main/envir.c:168) ==3638413== by 0x4C54AF: R_findVarInFrame (svn/R-devel/src/main/envir.c:1249) ==3638413== by 0x4C54AF: R_findVar (svn/R-devel/src/main/envir.c:1387) ==3638413== by 0x4F4844: Rf_eval (svn/R-devel/src/main/eval.c:1175) ==3638413== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3638413== Block was alloc'd at ==3638413== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3638413== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3638413== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3638413== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3638413== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3638413== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3638413== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3638413== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3638413== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3638413== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3638413== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3638413== ==3638413== Invalid read of size 16 ==3638413== at 0x247D31F4: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3638413== by 0x247D31F4: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3638413== by 0x247D31F4: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3638413== by 0x247D31F4: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3638413== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3638413== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3638413== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3638413== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3638413== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3638413== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3638413== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3638413== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3638413== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3638413== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3638413== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3638413== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3638413== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3638413== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3638413== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3638413== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3638413== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3638413== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3638413== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3638413== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3638413== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3638413== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3638413== Address 0x1c604010 is 48 bytes inside a block of size 1,840 free'd ==3638413== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3638413== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3638413== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3638413== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3638413== by 0x53830B: CONS_NR (svn/R-devel/src/main/memory.c:2519) ==3638413== by 0x52D9A2: Rf_matchArgs_NR (svn/R-devel/src/main/match.c:196) ==3638413== by 0x52E1B8: Rf_matchArgs_RC (svn/R-devel/src/main/match.c:392) ==3638413== by 0x4D7080: make_applyClosure_env (svn/R-devel/src/main/eval.c:2261) ==3638413== by 0x4F7251: applyClosure_core (svn/R-devel/src/main/eval.c:2304) ==3638413== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3638413== by 0x4C046C: getActiveValue (svn/R-devel/src/main/envir.c:168) ==3638413== by 0x4C54AF: R_findVarInFrame (svn/R-devel/src/main/envir.c:1249) ==3638413== by 0x4C54AF: R_findVar (svn/R-devel/src/main/envir.c:1387) ==3638413== by 0x4F4844: Rf_eval (svn/R-devel/src/main/eval.c:1175) ==3638413== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3638413== Block was alloc'd at ==3638413== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3638413== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3638413== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3638413== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3638413== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3638413== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3638413== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3638413== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3638413== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3638413== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3638413== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3638413== ==3638413== Invalid read of size 16 ==3638413== at 0x247D3204: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3638413== by 0x247D3204: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3638413== by 0x247D3204: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3638413== by 0x247D3204: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3638413== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3638413== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3638413== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3638413== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3638413== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3638413== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3638413== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3638413== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3638413== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3638413== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3638413== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3638413== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3638413== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3638413== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3638413== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3638413== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3638413== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3638413== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3638413== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3638413== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3638413== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3638413== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3638413== Address 0x1c604020 is 64 bytes inside a block of size 1,840 free'd ==3638413== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3638413== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3638413== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3638413== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3638413== by 0x53830B: CONS_NR (svn/R-devel/src/main/memory.c:2519) ==3638413== by 0x52D9A2: Rf_matchArgs_NR (svn/R-devel/src/main/match.c:196) ==3638413== by 0x52E1B8: Rf_matchArgs_RC (svn/R-devel/src/main/match.c:392) ==3638413== by 0x4D7080: make_applyClosure_env (svn/R-devel/src/main/eval.c:2261) ==3638413== by 0x4F7251: applyClosure_core (svn/R-devel/src/main/eval.c:2304) ==3638413== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3638413== by 0x4C046C: getActiveValue (svn/R-devel/src/main/envir.c:168) ==3638413== by 0x4C54AF: R_findVarInFrame (svn/R-devel/src/main/envir.c:1249) ==3638413== by 0x4C54AF: R_findVar (svn/R-devel/src/main/envir.c:1387) ==3638413== by 0x4F4844: Rf_eval (svn/R-devel/src/main/eval.c:1175) ==3638413== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3638413== Block was alloc'd at ==3638413== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3638413== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3638413== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3638413== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3638413== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3638413== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3638413== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3638413== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3638413== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3638413== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3638413== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3638413== ==3638413== Invalid read of size 16 ==3638413== at 0x247D3211: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3638413== by 0x247D3211: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3638413== by 0x247D3211: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3638413== by 0x247D3211: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3638413== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3638413== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3638413== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3638413== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3638413== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3638413== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3638413== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3638413== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3638413== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3638413== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3638413== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3638413== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3638413== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3638413== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3638413== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3638413== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3638413== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3638413== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3638413== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3638413== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3638413== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3638413== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3638413== Address 0x1c604030 is 80 bytes inside a block of size 1,840 free'd ==3638413== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3638413== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3638413== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3638413== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3638413== by 0x53830B: CONS_NR (svn/R-devel/src/main/memory.c:2519) ==3638413== by 0x52D9A2: Rf_matchArgs_NR (svn/R-devel/src/main/match.c:196) ==3638413== by 0x52E1B8: Rf_matchArgs_RC (svn/R-devel/src/main/match.c:392) ==3638413== by 0x4D7080: make_applyClosure_env (svn/R-devel/src/main/eval.c:2261) ==3638413== by 0x4F7251: applyClosure_core (svn/R-devel/src/main/eval.c:2304) ==3638413== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3638413== by 0x4C046C: getActiveValue (svn/R-devel/src/main/envir.c:168) ==3638413== by 0x4C54AF: R_findVarInFrame (svn/R-devel/src/main/envir.c:1249) ==3638413== by 0x4C54AF: R_findVar (svn/R-devel/src/main/envir.c:1387) ==3638413== by 0x4F4844: Rf_eval (svn/R-devel/src/main/eval.c:1175) ==3638413== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3638413== Block was alloc'd at ==3638413== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3638413== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3638413== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3638413== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3638413== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3638413== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3638413== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3638413== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3638413== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3638413== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3638413== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3638413== ==3638413== Invalid read of size 16 ==3638413== at 0x247D321E: pmul (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:237) ==3638413== by 0x247D321E: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:959) ==3638413== by 0x247D321E: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:95) ==3638413== by 0x247D321E: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3638413== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3638413== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3638413== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3638413== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3638413== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3638413== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3638413== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3638413== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3638413== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3638413== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3638413== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3638413== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3638413== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3638413== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3638413== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3638413== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3638413== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3638413== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3638413== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3638413== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3638413== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3638413== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3638413== Address 0x1c604040 is 96 bytes inside a block of size 1,840 free'd ==3638413== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3638413== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3638413== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3638413== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3638413== by 0x53830B: CONS_NR (svn/R-devel/src/main/memory.c:2519) ==3638413== by 0x52D9A2: Rf_matchArgs_NR (svn/R-devel/src/main/match.c:196) ==3638413== by 0x52E1B8: Rf_matchArgs_RC (svn/R-devel/src/main/match.c:392) ==3638413== by 0x4D7080: make_applyClosure_env (svn/R-devel/src/main/eval.c:2261) ==3638413== by 0x4F7251: applyClosure_core (svn/R-devel/src/main/eval.c:2304) ==3638413== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3638413== by 0x4C046C: getActiveValue (svn/R-devel/src/main/envir.c:168) ==3638413== by 0x4C54AF: R_findVarInFrame (svn/R-devel/src/main/envir.c:1249) ==3638413== by 0x4C54AF: R_findVar (svn/R-devel/src/main/envir.c:1387) ==3638413== by 0x4F4844: Rf_eval (svn/R-devel/src/main/eval.c:1175) ==3638413== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3638413== Block was alloc'd at ==3638413== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3638413== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3638413== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3638413== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3638413== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3638413== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3638413== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3638413== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3638413== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3638413== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3638413== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3638413== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3638413== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3638413== > > proc.time() user system elapsed 137.994 1.371 138.053 ==3638413== ==3638413== HEAP SUMMARY: ==3638413== in use at exit: 203,686,906 bytes in 41,968 blocks ==3638413== total heap usage: 344,213 allocs, 302,245 frees, 455,390,306 bytes allocated ==3638413== ==3638413== LEAK SUMMARY: ==3638413== definitely lost: 0 bytes in 0 blocks ==3638413== indirectly lost: 0 bytes in 0 blocks ==3638413== possibly lost: 0 bytes in 0 blocks ==3638413== still reachable: 203,684,358 bytes in 41,967 blocks ==3638413== suppressed: 2,548 bytes in 1 blocks ==3638413== Reachable blocks (those to which a pointer was found) are not shown. ==3638413== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3638413== ==3638413== For lists of detected and suppressed errors, rerun with: -s ==3638413== ERROR SUMMARY: 16128 errors from 5 contexts (suppressed: 0 from 0)