==3335457== Memcheck, a memory error detector ==3335457== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==3335457== Using Valgrind-3.24.0 and LibVEX; rerun with -h for copyright info ==3335457== Command: /data/blackswan/ripley/R/R-devel-vg/bin/exec/R -f AAAtest-all.R --restore --save --no-readline --vanilla ==3335457== R Under development (unstable) (2026-07-02 r90204) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > if (base::require("testthat", quietly = TRUE)) { + pkg <- "lme4" + require(pkg, character.only=TRUE, quietly=TRUE) + if(getRversion() < "3.5.0") { withAutoprint <- identity ; prt <- print } else { prt <- identity } + if(Sys.getenv("USER") %in% c("maechler", "bbolker")) withAutoprint({ + ## for developers' sake: + lP <- .libPaths() # ---- .libPaths() : ---- + prt(lP) + ## ---- Entries in .libPaths()[1] : ---- + prt(list.files(lP[1], include.dirs=TRUE)) + prt(sessionInfo()) + prt(packageDescription("Matrix")) + ## 'lme4' from packageDescription "file" : + prt(attr(packageDescription("lme4"), "file")) + }) + test_check(pkg) + ##======== ^^^ + print(warnings()) # TODO? catch most of these by expect_warning(..) + } else { + cat( "package 'testthat' not available, cannot run unit tests\n" ) + } ==3335457== Invalid read of size 8 ==3335457== at 0x24C6E545: coeff (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:925) ==3335457== by 0x24C6E545: assignCoeff (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654) ==3335457== by 0x24C6E545: assignCoeffByOuterInner (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:668) ==3335457== by 0x24C6E545: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:347) ==3335457== by 0x24C6E545: call_dense_assignment_loop >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785) ==3335457== by 0x24C6E545: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954) ==3335457== by 0x24C6E545: call_assignment_no_alias >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C6E545: call_assignment >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858) ==3335457== by 0x24C6E545: call_assignment >, Eigen::Product > >, Eigen::Map >, 1> > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836) ==3335457== by 0x24C6E545: operator= > >, Eigen::Map >, 1> > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66) ==3335457== by 0x24C6E545: lme4::merPredD::updateXwts(Eigen::Array const&) (packages/tests-vg/lme4/src/predModule.cpp:221) ==3335457== by 0x24C46A2F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:274) ==3335457== by 0x24C46A2F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== by 0x4F96BC: do_set (svn/R-devel/src/main/eval.c:3585) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== Address 0x22a23930 is 48 bytes inside a block of size 1,840 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3335457== by 0x4C6E51: Rf_defineVar (svn/R-devel/src/main/envir.c:1996) ==3335457== by 0x4F96E0: do_set (svn/R-devel/src/main/eval.c:3590) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4E5D3A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4E5D3A: bcEval_loop (svn/R-devel/src/main/eval.c:8121) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== Invalid read of size 16 ==3335457== at 0x24C671F4: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3335457== by 0x24C671F4: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3335457== by 0x24C671F4: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3335457== by 0x24C671F4: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3335457== by 0x24C7BD5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3335457== by 0x24C7BD5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3335457== by 0x24C7BD5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3335457== by 0x24C713BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3335457== by 0x24C713BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3335457== by 0x24C713BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3335457== by 0x24C713BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3335457== by 0x24C713BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3335457== by 0x24C713BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3335457== by 0x24C4686F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3335457== by 0x24C4686F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== Address 0x22a23930 is 48 bytes inside a block of size 1,840 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3335457== by 0x4C6E51: Rf_defineVar (svn/R-devel/src/main/envir.c:1996) ==3335457== by 0x4F96E0: do_set (svn/R-devel/src/main/eval.c:3590) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4E5D3A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4E5D3A: bcEval_loop (svn/R-devel/src/main/eval.c:8121) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== Invalid read of size 16 ==3335457== at 0x24C67204: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3335457== by 0x24C67204: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3335457== by 0x24C67204: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3335457== by 0x24C67204: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3335457== by 0x24C7BD5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3335457== by 0x24C7BD5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3335457== by 0x24C7BD5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3335457== by 0x24C713BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3335457== by 0x24C713BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3335457== by 0x24C713BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3335457== by 0x24C713BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3335457== by 0x24C713BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3335457== by 0x24C713BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3335457== by 0x24C4686F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3335457== by 0x24C4686F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== Address 0x22a23940 is 64 bytes inside a block of size 1,840 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3335457== by 0x4C6E51: Rf_defineVar (svn/R-devel/src/main/envir.c:1996) ==3335457== by 0x4F96E0: do_set (svn/R-devel/src/main/eval.c:3590) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4E5D3A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4E5D3A: bcEval_loop (svn/R-devel/src/main/eval.c:8121) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== Invalid read of size 16 ==3335457== at 0x24C67211: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3335457== by 0x24C67211: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3335457== by 0x24C67211: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3335457== by 0x24C67211: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3335457== by 0x24C7BD5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3335457== by 0x24C7BD5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3335457== by 0x24C7BD5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3335457== by 0x24C713BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3335457== by 0x24C713BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3335457== by 0x24C713BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3335457== by 0x24C713BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3335457== by 0x24C713BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3335457== by 0x24C713BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3335457== by 0x24C4686F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3335457== by 0x24C4686F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== Address 0x22a23950 is 80 bytes inside a block of size 1,840 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3335457== by 0x4C6E51: Rf_defineVar (svn/R-devel/src/main/envir.c:1996) ==3335457== by 0x4F96E0: do_set (svn/R-devel/src/main/eval.c:3590) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4E5D3A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4E5D3A: bcEval_loop (svn/R-devel/src/main/eval.c:8121) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== Invalid read of size 16 ==3335457== at 0x24C6721E: pmul (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:237) ==3335457== by 0x24C6721E: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:959) ==3335457== by 0x24C6721E: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:95) ==3335457== by 0x24C6721E: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3335457== by 0x24C7BD5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3335457== by 0x24C7BD5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3335457== by 0x24C7BD5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3335457== by 0x24C713BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3335457== by 0x24C713BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3335457== by 0x24C713BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3335457== by 0x24C713BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3335457== by 0x24C713BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3335457== by 0x24C713BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3335457== by 0x24C4686F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3335457== by 0x24C4686F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== Address 0x22a23960 is 96 bytes inside a block of size 1,840 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3335457== by 0x4C6E51: Rf_defineVar (svn/R-devel/src/main/envir.c:1996) ==3335457== by 0x4F96E0: do_set (svn/R-devel/src/main/eval.c:3590) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4E5D3A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4E5D3A: bcEval_loop (svn/R-devel/src/main/eval.c:8121) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== Invalid read of size 16 ==3335457== at 0x24C6760C: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3335457== by 0x24C6760C: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3335457== by 0x24C6760C: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3335457== by 0x24C6760C: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:201) ==3335457== by 0x24C7BD5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3335457== by 0x24C7BD5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3335457== by 0x24C7BD5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3335457== by 0x24C713BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3335457== by 0x24C713BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3335457== by 0x24C713BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3335457== by 0x24C713BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3335457== by 0x24C713BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3335457== by 0x24C713BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3335457== by 0x24C4686F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3335457== by 0x24C4686F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== Address 0x26b5ef80 is 15,472 bytes inside a block of size 46,464 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x53875E: Rf_mkPROMISE (svn/R-devel/src/main/memory.c:2613) ==3335457== by 0x4D794A: promiseArgsEx (svn/R-devel/src/main/eval.c:3840) ==3335457== by 0x4F4712: Rf_promiseArgs (svn/R-devel/src/main/eval.c:3854) ==3335457== by 0x4F4712: Rf_eval (svn/R-devel/src/main/eval.c:1276) ==3335457== by 0x4F7D61: do_if (svn/R-devel/src/main/eval.c:2709) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F760A: R_execMethod (svn/R-devel/src/main/eval.c:2567) ==3335457== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== Invalid read of size 16 ==3335457== at 0x24C6761C: pmul (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:237) ==3335457== by 0x24C6761C: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:959) ==3335457== by 0x24C6761C: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:95) ==3335457== by 0x24C6761C: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:201) ==3335457== by 0x24C7BD5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3335457== by 0x24C7BD5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3335457== by 0x24C7BD5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3335457== by 0x24C713BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3335457== by 0x24C713BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3335457== by 0x24C713BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3335457== by 0x24C713BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3335457== by 0x24C713BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3335457== by 0x24C713BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3335457== by 0x24C4686F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3335457== by 0x24C4686F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== Address 0x26b5ef90 is 15,488 bytes inside a block of size 46,464 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x53875E: Rf_mkPROMISE (svn/R-devel/src/main/memory.c:2613) ==3335457== by 0x4D794A: promiseArgsEx (svn/R-devel/src/main/eval.c:3840) ==3335457== by 0x4F4712: Rf_promiseArgs (svn/R-devel/src/main/eval.c:3854) ==3335457== by 0x4F4712: Rf_eval (svn/R-devel/src/main/eval.c:1276) ==3335457== by 0x4F7D61: do_if (svn/R-devel/src/main/eval.c:2709) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F760A: R_execMethod (svn/R-devel/src/main/eval.c:2567) ==3335457== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== Invalid read of size 16 ==3335457== at 0x24C6748C: pmul (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:237) ==3335457== by 0x24C6748C: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:959) ==3335457== by 0x24C6748C: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:95) ==3335457== by 0x24C6748C: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:238) ==3335457== by 0x24C7BD5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3335457== by 0x24C7BD5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3335457== by 0x24C7BD5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3335457== by 0x24C713BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3335457== by 0x24C713BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3335457== by 0x24C713BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3335457== by 0x24C713BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3335457== by 0x24C713BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3335457== by 0x24C713BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3335457== by 0x24C4686F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3335457== by 0x24C4686F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== Address 0x26b5efa0 is 15,504 bytes inside a block of size 46,464 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x53875E: Rf_mkPROMISE (svn/R-devel/src/main/memory.c:2613) ==3335457== by 0x4D794A: promiseArgsEx (svn/R-devel/src/main/eval.c:3840) ==3335457== by 0x4F4712: Rf_promiseArgs (svn/R-devel/src/main/eval.c:3854) ==3335457== by 0x4F4712: Rf_eval (svn/R-devel/src/main/eval.c:1276) ==3335457== by 0x4F7D61: do_if (svn/R-devel/src/main/eval.c:2709) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F760A: R_execMethod (svn/R-devel/src/main/eval.c:2567) ==3335457== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== ==3335457== More than 10000000 total errors detected. I'm not reporting any more. ==3335457== Final error counts will be inaccurate. Go fix your program! ==3335457== Rerun with --error-limit=no to disable this cutoff. Note ==3335457== that errors may occur in your program without prior warning from ==3335457== Valgrind, because errors are no longer being displayed. ==3335457== Saving _problems/test-isSingular-97.R [ FAIL 1 | WARN 0 | SKIP 6 | PASS 1768 ] ══ Skipped tests (6) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-eval.R:2:1' • Skipping (1): 'test-covariance_nlmer.R:22:3' • empty test (3): , , • testLevel < 2 is TRUE (1): 'test-predict.R:689:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-isSingular.R:96:3'): checking singular fit for merMod ────────── Error: Downdated VtV is not positive definite Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-isSingular.R:96:3 2. │ └─base::withCallingHandlers(...) 3. └─lme4::glmer(form, family = poisson(link = "log"), data = dat) 4. └─lme4::optimizeGlmer(...) 5. └─lme4:::optwrap(...) 6. ├─base::withCallingHandlers(...) 7. ├─base::do.call(optfun, arglist) 8. └─lme4 (local) ``(...) 9. ├─nM$newf(fn(nM$xeval())) 10. │ └─base::stopifnot(length(value <- as.numeric(value)) == 1L) 11. └─lme4 (local) fn(nM$xeval()) 12. └─lme4 (local) pwrssUpdate(...) [ FAIL 1 | WARN 0 | SKIP 6 | PASS 1768 ] Error: ! Test failures. Execution halted ==3335457== ==3335457== HEAP SUMMARY: ==3335457== in use at exit: 348,891,481 bytes in 69,951 blocks ==3335457== total heap usage: 14,212,749 allocs, 14,142,798 frees, 14,515,463,106 bytes allocated ==3335457== ==3335457== LEAK SUMMARY: ==3335457== definitely lost: 0 bytes in 0 blocks ==3335457== indirectly lost: 0 bytes in 0 blocks ==3335457== possibly lost: 0 bytes in 0 blocks ==3335457== still reachable: 348,888,601 bytes in 69,948 blocks ==3335457== suppressed: 2,880 bytes in 3 blocks ==3335457== Reachable blocks (those to which a pointer was found) are not shown. ==3335457== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3335457== ==3335457== For lists of detected and suppressed errors, rerun with: -s ==3335457== ERROR SUMMARY: 10000000 errors from 8 contexts (suppressed: 0 from 0)