* using log directory ‘/data/blackswan/ripley/R/packages/tests-vg/lme4.Rcheck’ * using R Under development (unstable) (2026-07-02 r90204) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * current time: 2026-07-05 21:29:36 UTC * using options ‘--use-valgrind --no-stop-on-test-error’ * checking for file ‘lme4/DESCRIPTION’ ... OK * this is package ‘lme4’ version ‘2.0-1’ * package encoding: UTF-8 * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘lme4’ can be installed ... [82s/49s] OK * used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [23m/23m] OK * checking tests ... [247m/248m] ERROR Running ‘AAAtest-all.R’ [93m/94m] Running ‘HSAURtrees.R’ [130s/133s] Running ‘REMLdev.R’ [129s/131s] Running ‘ST.R’ [124s/125s] Running ‘agridat_gotway.R’ [141s/142s] Running ‘bootMer.R’ [294s/288s] Running ‘boundary.R’ [11m/12m] Running ‘confint.R’ [209s/210s] Running ‘devCritFun.R’ [121s/121s] Running ‘drop.R’ [147s/148s] Running ‘drop1contrasts.R’ [135s/135s] Running ‘dynload.R’ [20s/20s] Running ‘elston.R’ [140s/140s] Running ‘evalCall.R’ [133s/134s] Running ‘extras.R’ [116s/117s] Running ‘falsezero_dorie.R’ [124s/125s] Running ‘fewlevels.R’ [16s/16s] Running ‘getME.R’ [146s/147s] Running ‘glmer-1.R’ [206s/208s] Running ‘glmerControlPass.R’ [275s/276s] Running ‘glmerWarn.R’ [174s/175s] Running ‘glmmExt.R’ [334s/336s] Running ‘glmmWeights.R’ [316s/318s] Running ‘hatvalues.R’ [125s/126s] Running ‘is.R’ [137s/138s] Running ‘lmList-tst.R’ [131s/131s] Running ‘lme4_nlme.R’ [130s/131s] Running ‘lmer-0.R’ [133s/134s] Running ‘lmer-1.R’ [113s/113s] Running ‘lmer-conv.R’ [122s/123s] Running ‘lmer2_ex.R’ [118s/118s] Running ‘methods.R’ [169s/170s] Running ‘minval.R’ [119s/120s] Running ‘modFormula.R’ [187s/188s] Running ‘nbinom.R’ [118s/119s] Running ‘nlmer-conv.R’ [117s/117s] Running ‘nlmer.R’ [130s/131s] Running ‘offset.R’ [164s/165s] Running ‘optimizer.R’ [191s/192s] Running ‘polytomous.R’ [114s/115s] Running ‘prLogistic.R’ [114s/114s] Running ‘predict_basis.R’ [144s/145s] Running ‘predsim.R’ [165s/166s] Running ‘priorWeights.R’ [285s/286s] Running ‘priorWeightsModComp.R’ [183s/184s] Running ‘profile-tst.R’ [117s/118s] Running ‘refit.R’ [119s/119s] Running ‘resids.R’ [133s/134s] Running ‘respiratory.R’ [162s/163s] Running ‘simulate.R’ [126s/127s] Running ‘test-glmernbref.R’ [179s/181s] Running ‘testOptControl.R’ [127s/128s] Running ‘testcolonizer.R’ [136s/137s] Running ‘testcrab.R’ [339s/342s] Running ‘throw.R’ [174s/175s] Running ‘varcorr.R’ [143s/144s] Running ‘vcov-etc.R’ [124s/124s] Running the tests in ‘tests/AAAtest-all.R’ failed. Complete output: > if (base::require("testthat", quietly = TRUE)) { + pkg <- "lme4" + require(pkg, character.only=TRUE, quietly=TRUE) + if(getRversion() < "3.5.0") { withAutoprint <- identity ; prt <- print } else { prt <- identity } + if(Sys.getenv("USER") %in% c("maechler", "bbolker")) withAutoprint({ + ## for developers' sake: + lP <- .libPaths() # ---- .libPaths() : ---- + prt(lP) + ## ---- Entries in .libPaths()[1] : ---- + prt(list.files(lP[1], include.dirs=TRUE)) + prt(sessionInfo()) + prt(packageDescription("Matrix")) + ## 'lme4' from packageDescription "file" : + prt(attr(packageDescription("lme4"), "file")) + }) + test_check(pkg) + ##======== ^^^ + print(warnings()) # TODO? catch most of these by expect_warning(..) + } else { + cat( "package 'testthat' not available, cannot run unit tests\n" ) + } ==3335457== Invalid read of size 8 ==3335457== at 0x24C6E545: coeff (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:925) ==3335457== by 0x24C6E545: assignCoeff (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654) ==3335457== by 0x24C6E545: assignCoeffByOuterInner (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:668) ==3335457== by 0x24C6E545: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:347) ==3335457== by 0x24C6E545: call_dense_assignment_loop >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785) ==3335457== by 0x24C6E545: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954) ==3335457== by 0x24C6E545: call_assignment_no_alias >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C6E545: call_assignment >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858) ==3335457== by 0x24C6E545: call_assignment >, Eigen::Product > >, Eigen::Map >, 1> > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836) ==3335457== by 0x24C6E545: operator= > >, Eigen::Map >, 1> > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66) ==3335457== by 0x24C6E545: lme4::merPredD::updateXwts(Eigen::Array const&) (packages/tests-vg/lme4/src/predModule.cpp:221) ==3335457== by 0x24C46A2F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:274) ==3335457== by 0x24C46A2F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== by 0x4F96BC: do_set (svn/R-devel/src/main/eval.c:3585) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== Address 0x22a23930 is 48 bytes inside a block of size 1,840 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3335457== by 0x4C6E51: Rf_defineVar (svn/R-devel/src/main/envir.c:1996) ==3335457== by 0x4F96E0: do_set (svn/R-devel/src/main/eval.c:3590) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4E5D3A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4E5D3A: bcEval_loop (svn/R-devel/src/main/eval.c:8121) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== Invalid read of size 16 ==3335457== at 0x24C671F4: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3335457== by 0x24C671F4: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3335457== by 0x24C671F4: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3335457== by 0x24C671F4: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3335457== by 0x24C7BD5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3335457== by 0x24C7BD5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3335457== by 0x24C7BD5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3335457== by 0x24C713BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3335457== by 0x24C713BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3335457== by 0x24C713BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3335457== by 0x24C713BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3335457== by 0x24C713BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3335457== by 0x24C713BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3335457== by 0x24C4686F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3335457== by 0x24C4686F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== Address 0x22a23930 is 48 bytes inside a block of size 1,840 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3335457== by 0x4C6E51: Rf_defineVar (svn/R-devel/src/main/envir.c:1996) ==3335457== by 0x4F96E0: do_set (svn/R-devel/src/main/eval.c:3590) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4E5D3A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4E5D3A: bcEval_loop (svn/R-devel/src/main/eval.c:8121) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== Invalid read of size 16 ==3335457== at 0x24C67204: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3335457== by 0x24C67204: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3335457== by 0x24C67204: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3335457== by 0x24C67204: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3335457== by 0x24C7BD5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3335457== by 0x24C7BD5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3335457== by 0x24C7BD5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3335457== by 0x24C713BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3335457== by 0x24C713BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3335457== by 0x24C713BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3335457== by 0x24C713BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3335457== by 0x24C713BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3335457== by 0x24C713BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3335457== by 0x24C4686F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3335457== by 0x24C4686F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== Address 0x22a23940 is 64 bytes inside a block of size 1,840 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3335457== by 0x4C6E51: Rf_defineVar (svn/R-devel/src/main/envir.c:1996) ==3335457== by 0x4F96E0: do_set (svn/R-devel/src/main/eval.c:3590) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4E5D3A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4E5D3A: bcEval_loop (svn/R-devel/src/main/eval.c:8121) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== Invalid read of size 16 ==3335457== at 0x24C67211: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3335457== by 0x24C67211: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3335457== by 0x24C67211: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3335457== by 0x24C67211: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3335457== by 0x24C7BD5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3335457== by 0x24C7BD5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3335457== by 0x24C7BD5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3335457== by 0x24C713BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3335457== by 0x24C713BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3335457== by 0x24C713BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3335457== by 0x24C713BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3335457== by 0x24C713BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3335457== by 0x24C713BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3335457== by 0x24C4686F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3335457== by 0x24C4686F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== Address 0x22a23950 is 80 bytes inside a block of size 1,840 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3335457== by 0x4C6E51: Rf_defineVar (svn/R-devel/src/main/envir.c:1996) ==3335457== by 0x4F96E0: do_set (svn/R-devel/src/main/eval.c:3590) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4E5D3A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4E5D3A: bcEval_loop (svn/R-devel/src/main/eval.c:8121) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== Invalid read of size 16 ==3335457== at 0x24C6721E: pmul (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:237) ==3335457== by 0x24C6721E: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:959) ==3335457== by 0x24C6721E: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:95) ==3335457== by 0x24C6721E: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3335457== by 0x24C7BD5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3335457== by 0x24C7BD5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3335457== by 0x24C7BD5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3335457== by 0x24C713BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3335457== by 0x24C713BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3335457== by 0x24C713BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3335457== by 0x24C713BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3335457== by 0x24C713BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3335457== by 0x24C713BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3335457== by 0x24C4686F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3335457== by 0x24C4686F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== Address 0x22a23960 is 96 bytes inside a block of size 1,840 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3335457== by 0x4C6E51: Rf_defineVar (svn/R-devel/src/main/envir.c:1996) ==3335457== by 0x4F96E0: do_set (svn/R-devel/src/main/eval.c:3590) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4E5D3A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4E5D3A: bcEval_loop (svn/R-devel/src/main/eval.c:8121) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== Invalid read of size 16 ==3335457== at 0x24C6760C: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3335457== by 0x24C6760C: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3335457== by 0x24C6760C: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3335457== by 0x24C6760C: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:201) ==3335457== by 0x24C7BD5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3335457== by 0x24C7BD5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3335457== by 0x24C7BD5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3335457== by 0x24C713BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3335457== by 0x24C713BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3335457== by 0x24C713BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3335457== by 0x24C713BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3335457== by 0x24C713BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3335457== by 0x24C713BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3335457== by 0x24C4686F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3335457== by 0x24C4686F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== Address 0x26b5ef80 is 15,472 bytes inside a block of size 46,464 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x53875E: Rf_mkPROMISE (svn/R-devel/src/main/memory.c:2613) ==3335457== by 0x4D794A: promiseArgsEx (svn/R-devel/src/main/eval.c:3840) ==3335457== by 0x4F4712: Rf_promiseArgs (svn/R-devel/src/main/eval.c:3854) ==3335457== by 0x4F4712: Rf_eval (svn/R-devel/src/main/eval.c:1276) ==3335457== by 0x4F7D61: do_if (svn/R-devel/src/main/eval.c:2709) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F760A: R_execMethod (svn/R-devel/src/main/eval.c:2567) ==3335457== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== Invalid read of size 16 ==3335457== at 0x24C6761C: pmul (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:237) ==3335457== by 0x24C6761C: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:959) ==3335457== by 0x24C6761C: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:95) ==3335457== by 0x24C6761C: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:201) ==3335457== by 0x24C7BD5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3335457== by 0x24C7BD5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3335457== by 0x24C7BD5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3335457== by 0x24C713BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3335457== by 0x24C713BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3335457== by 0x24C713BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3335457== by 0x24C713BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3335457== by 0x24C713BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3335457== by 0x24C713BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3335457== by 0x24C4686F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3335457== by 0x24C4686F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== Address 0x26b5ef90 is 15,488 bytes inside a block of size 46,464 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x53875E: Rf_mkPROMISE (svn/R-devel/src/main/memory.c:2613) ==3335457== by 0x4D794A: promiseArgsEx (svn/R-devel/src/main/eval.c:3840) ==3335457== by 0x4F4712: Rf_promiseArgs (svn/R-devel/src/main/eval.c:3854) ==3335457== by 0x4F4712: Rf_eval (svn/R-devel/src/main/eval.c:1276) ==3335457== by 0x4F7D61: do_if (svn/R-devel/src/main/eval.c:2709) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F760A: R_execMethod (svn/R-devel/src/main/eval.c:2567) ==3335457== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== Invalid read of size 16 ==3335457== at 0x24C6748C: pmul (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:237) ==3335457== by 0x24C6748C: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:959) ==3335457== by 0x24C6748C: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:95) ==3335457== by 0x24C6748C: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:238) ==3335457== by 0x24C7BD5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3335457== by 0x24C7BD5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3335457== by 0x24C7BD5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3335457== by 0x24C713BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3335457== by 0x24C713BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3335457== by 0x24C713BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3335457== by 0x24C713BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3335457== by 0x24C713BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3335457== by 0x24C713BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3335457== by 0x24C713BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3335457== by 0x24C713BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3335457== by 0x24C4686F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3335457== by 0x24C4686F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3335457== by 0x24C4CE6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3335457== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3335457== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3335457== Address 0x26b5efa0 is 15,504 bytes inside a block of size 46,464 free'd ==3335457== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3335457== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3335457== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3335457== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3335457== by 0x53875E: Rf_mkPROMISE (svn/R-devel/src/main/memory.c:2613) ==3335457== by 0x4D794A: promiseArgsEx (svn/R-devel/src/main/eval.c:3840) ==3335457== by 0x4F4712: Rf_promiseArgs (svn/R-devel/src/main/eval.c:3854) ==3335457== by 0x4F4712: Rf_eval (svn/R-devel/src/main/eval.c:1276) ==3335457== by 0x4F7D61: do_if (svn/R-devel/src/main/eval.c:2709) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3335457== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F760A: R_execMethod (svn/R-devel/src/main/eval.c:2567) ==3335457== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==3335457== Block was alloc'd at ==3335457== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3335457== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3335457== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3335457== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3335457== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3335457== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3335457== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3335457== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3335457== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3335457== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3335457== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3335457== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3335457== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3335457== ==3335457== ==3335457== More than 10000000 total errors detected. I'm not reporting any more. ==3335457== Final error counts will be inaccurate. Go fix your program! ==3335457== Rerun with --error-limit=no to disable this cutoff. Note ==3335457== that errors may occur in your program without prior warning from ==3335457== Valgrind, because errors are no longer being displayed. ==3335457== Saving _problems/test-isSingular-97.R [ FAIL 1 | WARN 0 | SKIP 6 | PASS 1768 ] ══ Skipped tests (6) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-eval.R:2:1' • Skipping (1): 'test-covariance_nlmer.R:22:3' • empty test (3): , , • testLevel < 2 is TRUE (1): 'test-predict.R:689:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-isSingular.R:96:3'): checking singular fit for merMod ────────── Error: Downdated VtV is not positive definite Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-isSingular.R:96:3 2. │ └─base::withCallingHandlers(...) 3. └─lme4::glmer(form, family = poisson(link = "log"), data = dat) 4. └─lme4::optimizeGlmer(...) 5. └─lme4:::optwrap(...) 6. ├─base::withCallingHandlers(...) 7. ├─base::do.call(optfun, arglist) 8. └─lme4 (local) ``(...) 9. ├─nM$newf(fn(nM$xeval())) 10. │ └─base::stopifnot(length(value <- as.numeric(value)) == 1L) 11. └─lme4 (local) fn(nM$xeval()) 12. └─lme4 (local) pwrssUpdate(...) [ FAIL 1 | WARN 0 | SKIP 6 | PASS 1768 ] Error: ! Test failures. Execution halted ==3335457== ==3335457== HEAP SUMMARY: ==3335457== in use at exit: 348,891,481 bytes in 69,951 blocks ==3335457== total heap usage: 14,212,749 allocs, 14,142,798 frees, 14,515,463,106 bytes allocated ==3335457== ==3335457== LEAK SUMMARY: ==3335457== definitely lost: 0 bytes in 0 blocks ==3335457== indirectly lost: 0 bytes in 0 blocks ==3335457== possibly lost: 0 bytes in 0 blocks ==3335457== still reachable: 348,888,601 bytes in 69,948 blocks ==3335457== suppressed: 2,880 bytes in 3 blocks ==3335457== Reachable blocks (those to which a pointer was found) are not shown. ==3335457== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3335457== ==3335457== For lists of detected and suppressed errors, rerun with: -s ==3335457== ERROR SUMMARY: 10000000 errors from 8 contexts (suppressed: 0 from 0) Running the tests in ‘tests/agridat_gotway.R’ failed. Complete output: > ## require(agridat) > ## dat <- gotway.hessianfly > > if (.Platform$OS.type != "windows") { + ## don't actually use gotway_hessianfly_fit or gotway_hessianfly_prof, + ## so we should be OK even with R< 3.0.1 + load(system.file("testdata","gotway_hessianfly.rda",package="lme4")) + # Block random. See Glimmix manual, output 1.18. + # Note: (Different parameterization) + + ## require("lme4.0") + ## fit2 <- glmer(cbind(y, n-y) ~ gen + (1|block), data=dat, family=binomial) + ## params <- list(fixef=fixef(fit2),theta=getME(fit2,"theta")) + ## detach("package:lme4.0") + lme4.0fit <- structure(list(fixef = structure(c(1.50345713031203, -0.193853259383803, + -0.540808391060274, -1.43419379979154, -0.203701042949808, -0.978322555343941, + -0.604078624475678, -1.67742449813309, -1.39842466673692, -0.681709344788684, + -1.46295367186169, -1.45908310198959, -3.55285756517073, -2.50731975980307, + -2.08716296677356, -2.96974270029992), .Names = c("(Intercept)", + "genG02", "genG03", "genG04", "genG05", "genG06", "genG07", "genG08", + "genG09", "genG10", "genG11", "genG12", "genG13", "genG14", "genG15", + "genG16")), theta = structure(0.0319087494293615, .Names = "block.(Intercept)")), .Names = c("fixef", + "theta")) + + ## start doesn't work because we don't get there + library(lme4) + m1 <- glmer(cbind(y, n-y) ~ gen + (1|block), data=gotway.hessianfly, + family=binomial) + m1B <- update(m1,control=glmerControl(optimizer="bobyqa")) + max(abs(m1@optinfo$derivs$gradient)) ## 0.0012 + max(abs(m1B@optinfo$derivs$gradient)) ## 2.03e-5 + abs(m1@optinfo$derivs$gradient)/abs(m1B@optinfo$derivs$gradient) + ## bobyqa gets gradients *at least* 1.64* lower + + lme4fit <- list(fixef=fixef(m1),theta=getME(m1,"theta")) + + ## hack around slight naming differences + lme4fit$theta <- unname(lme4fit$theta) + lme4.0fit$theta <- unname(lme4.0fit$theta) + ## difference in theta on x86_64-w64-mingw32 (64-bit) with r-devel is 0.000469576 + stopifnot(all.equal(lme4fit, lme4.0fit, tolerance = 5e-4)) + + ## Fun stuff: visualize and alternative model + + ## library(ggplot2) + ## dat$prop <- dat$y/dat$n + ## theme_set(theme_bw()) + ## ggplot(dat,aes(x=gen,y=prop,colour=block))+geom_point(aes(size=n))+ + ## geom_line(aes(group=block,colour=block))+ + ## geom_smooth(family=binomial,aes(weight=n,colour=block,group=block),method="glm", + ## alpha=0.1) + + ## dat$obs <- factor(seq(nrow(dat))) + ## m2 <- glmer(cbind(y, n-y) ~ block+ (1|gen) + (1|obs), data=dat, family=binomial) + + } ## not on windows/CRAN Loading required package: Matrix ==3459103== Invalid read of size 8 ==3459103== at 0x24FDA545: coeff (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:925) ==3459103== by 0x24FDA545: assignCoeff (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654) ==3459103== by 0x24FDA545: assignCoeffByOuterInner (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:668) ==3459103== by 0x24FDA545: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:347) ==3459103== by 0x24FDA545: call_dense_assignment_loop >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785) ==3459103== by 0x24FDA545: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954) ==3459103== by 0x24FDA545: call_assignment_no_alias >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3459103== by 0x24FDA545: call_assignment >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858) ==3459103== by 0x24FDA545: call_assignment >, Eigen::Product > >, Eigen::Map >, 1> > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836) ==3459103== by 0x24FDA545: operator= > >, Eigen::Map >, 1> > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66) ==3459103== by 0x24FDA545: lme4::merPredD::updateXwts(Eigen::Array const&) (packages/tests-vg/lme4/src/predModule.cpp:221) ==3459103== by 0x24FB2A2F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:274) ==3459103== by 0x24FB2A2F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3459103== by 0x24FB8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3459103== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3459103== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3459103== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3459103== by 0x4F96BC: do_set (svn/R-devel/src/main/eval.c:3585) ==3459103== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3459103== Address 0x1c44b290 is 48 bytes inside a block of size 8,240 free'd ==3459103== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3459103== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3459103== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3459103== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3459103== by 0x53830B: CONS_NR (svn/R-devel/src/main/memory.c:2519) ==3459103== by 0x4F9870: Rf_evalList (svn/R-devel/src/main/eval.c:3685) ==3459103== by 0x4F4A95: Rf_eval (svn/R-devel/src/main/eval.c:1249) ==3459103== by 0x4F9850: Rf_evalList (svn/R-devel/src/main/eval.c:3683) ==3459103== by 0x4F4A95: Rf_eval (svn/R-devel/src/main/eval.c:1249) ==3459103== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3459103== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3459103== Block was alloc'd at ==3459103== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3459103== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3459103== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3459103== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3459103== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3459103== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3459103== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3459103== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3459103== ==3459103== Invalid read of size 16 ==3459103== at 0x24FD31F4: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3459103== by 0x24FD31F4: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3459103== by 0x24FD31F4: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3459103== by 0x24FD31F4: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3459103== by 0x24FE7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3459103== by 0x24FE7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3459103== by 0x24FE7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3459103== by 0x24FDD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3459103== by 0x24FDD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3459103== by 0x24FDD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3459103== by 0x24FDD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3459103== by 0x24FDD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3459103== by 0x24FDD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3459103== by 0x24FDD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3459103== by 0x24FDD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3459103== by 0x24FDD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3459103== by 0x24FDD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3459103== by 0x24FB286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3459103== by 0x24FB286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3459103== by 0x24FB8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3459103== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3459103== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3459103== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3459103== Address 0x1c44b290 is 48 bytes inside a block of size 8,240 free'd ==3459103== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3459103== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3459103== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3459103== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3459103== by 0x53830B: CONS_NR (svn/R-devel/src/main/memory.c:2519) ==3459103== by 0x4F9870: Rf_evalList (svn/R-devel/src/main/eval.c:3685) ==3459103== by 0x4F4A95: Rf_eval (svn/R-devel/src/main/eval.c:1249) ==3459103== by 0x4F9850: Rf_evalList (svn/R-devel/src/main/eval.c:3683) ==3459103== by 0x4F4A95: Rf_eval (svn/R-devel/src/main/eval.c:1249) ==3459103== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3459103== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3459103== Block was alloc'd at ==3459103== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3459103== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3459103== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3459103== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3459103== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3459103== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3459103== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3459103== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3459103== ==3459103== Invalid read of size 16 ==3459103== at 0x24FD3204: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3459103== by 0x24FD3204: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3459103== by 0x24FD3204: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3459103== by 0x24FD3204: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3459103== by 0x24FE7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3459103== by 0x24FE7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3459103== by 0x24FE7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3459103== by 0x24FDD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3459103== by 0x24FDD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3459103== by 0x24FDD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3459103== by 0x24FDD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3459103== by 0x24FDD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3459103== by 0x24FDD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3459103== by 0x24FDD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3459103== by 0x24FDD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3459103== by 0x24FDD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3459103== by 0x24FDD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3459103== by 0x24FB286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3459103== by 0x24FB286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3459103== by 0x24FB8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3459103== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3459103== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3459103== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3459103== Address 0x1c44b2a0 is 64 bytes inside a block of size 8,240 free'd ==3459103== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3459103== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3459103== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3459103== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3459103== by 0x53830B: CONS_NR (svn/R-devel/src/main/memory.c:2519) ==3459103== by 0x4F9870: Rf_evalList (svn/R-devel/src/main/eval.c:3685) ==3459103== by 0x4F4A95: Rf_eval (svn/R-devel/src/main/eval.c:1249) ==3459103== by 0x4F9850: Rf_evalList (svn/R-devel/src/main/eval.c:3683) ==3459103== by 0x4F4A95: Rf_eval (svn/R-devel/src/main/eval.c:1249) ==3459103== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3459103== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3459103== Block was alloc'd at ==3459103== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3459103== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3459103== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3459103== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3459103== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3459103== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3459103== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3459103== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3459103== ==3459103== Invalid read of size 16 ==3459103== at 0x24FD3211: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3459103== by 0x24FD3211: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3459103== by 0x24FD3211: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3459103== by 0x24FD3211: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3459103== by 0x24FE7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3459103== by 0x24FE7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3459103== by 0x24FE7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3459103== by 0x24FDD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3459103== by 0x24FDD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3459103== by 0x24FDD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3459103== by 0x24FDD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3459103== by 0x24FDD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3459103== by 0x24FDD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3459103== by 0x24FDD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3459103== by 0x24FDD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3459103== by 0x24FDD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3459103== by 0x24FDD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3459103== by 0x24FB286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3459103== by 0x24FB286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3459103== by 0x24FB8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3459103== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3459103== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3459103== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3459103== Address 0x1c44b2b0 is 80 bytes inside a block of size 8,240 free'd ==3459103== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3459103== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3459103== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3459103== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3459103== by 0x53830B: CONS_NR (svn/R-devel/src/main/memory.c:2519) ==3459103== by 0x4F9870: Rf_evalList (svn/R-devel/src/main/eval.c:3685) ==3459103== by 0x4F4A95: Rf_eval (svn/R-devel/src/main/eval.c:1249) ==3459103== by 0x4F9850: Rf_evalList (svn/R-devel/src/main/eval.c:3683) ==3459103== by 0x4F4A95: Rf_eval (svn/R-devel/src/main/eval.c:1249) ==3459103== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3459103== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3459103== Block was alloc'd at ==3459103== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3459103== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3459103== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3459103== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3459103== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3459103== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3459103== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3459103== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3459103== ==3459103== Invalid read of size 16 ==3459103== at 0x24FD321E: pmul (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:237) ==3459103== by 0x24FD321E: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:959) ==3459103== by 0x24FD321E: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:95) ==3459103== by 0x24FD321E: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3459103== by 0x24FE7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3459103== by 0x24FE7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3459103== by 0x24FE7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3459103== by 0x24FDD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3459103== by 0x24FDD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3459103== by 0x24FDD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3459103== by 0x24FDD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3459103== by 0x24FDD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3459103== by 0x24FDD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3459103== by 0x24FDD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3459103== by 0x24FDD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3459103== by 0x24FDD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3459103== by 0x24FDD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3459103== by 0x24FB286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3459103== by 0x24FB286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3459103== by 0x24FB8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3459103== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3459103== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3459103== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3459103== Address 0x1c44b2c0 is 96 bytes inside a block of size 8,240 free'd ==3459103== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3459103== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3459103== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3459103== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3459103== by 0x53830B: CONS_NR (svn/R-devel/src/main/memory.c:2519) ==3459103== by 0x4F9870: Rf_evalList (svn/R-devel/src/main/eval.c:3685) ==3459103== by 0x4F4A95: Rf_eval (svn/R-devel/src/main/eval.c:1249) ==3459103== by 0x4F9850: Rf_evalList (svn/R-devel/src/main/eval.c:3683) ==3459103== by 0x4F4A95: Rf_eval (svn/R-devel/src/main/eval.c:1249) ==3459103== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3459103== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3459103== Block was alloc'd at ==3459103== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3459103== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3459103== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3459103== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3459103== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3459103== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3459103== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3459103== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3459103== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3459103== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3459103== Error: Downdated VtV is not positive definite Execution halted ==3459103== ==3459103== HEAP SUMMARY: ==3459103== in use at exit: 209,898,119 bytes in 44,796 blocks ==3459103== total heap usage: 240,672 allocs, 195,876 frees, 394,460,329 bytes allocated ==3459103== ==3459103== 416 bytes in 1 blocks are possibly lost in loss record 232 of 2,589 ==3459103== at 0x484B133: calloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:1675) ==3459103== by 0x4011F63: UnknownInlinedFun (/usr/src/debug/glibc-2.39-38.fc40.x86_64/elf/../include/rtld-malloc.h:44) ==3459103== by 0x4011F63: allocate_dtv (/usr/src/debug/glibc-2.39-38.fc40.x86_64/elf/../elf/dl-tls.c:395) ==3459103== by 0x4012A61: _dl_allocate_tls (/usr/src/debug/glibc-2.39-38.fc40.x86_64/elf/../elf/dl-tls.c:673) ==3459103== by 0x557CC03: allocate_stack (/usr/src/debug/glibc-2.39-38.fc40.x86_64/nptl/allocatestack.c:431) ==3459103== by 0x557CC03: pthread_create@@GLIBC_2.34 (/usr/src/debug/glibc-2.39-38.fc40.x86_64/nptl/pthread_create.c:660) ==3459103== by 0x20968DB6: cli__start_thread (/tmp/RtmpOgXr6R/R.INSTALL3b00f1391d945e/cli/src/thread.c:54) ==3459103== by 0x20968DF7: clic_start_thread (/tmp/RtmpOgXr6R/R.INSTALL3b00f1391d945e/cli/src/thread.c:78) ==3459103== by 0x4A924D: R_doDotCall (svn/R-devel/src/main/dotcode.c:760) ==3459103== by 0x4A97A3: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==3459103== by 0x4EEA31: bcEval_loop (svn/R-devel/src/main/eval.c:8085) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3459103== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3459103== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3459103== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3459103== ==3459103== LEAK SUMMARY: ==3459103== definitely lost: 0 bytes in 0 blocks ==3459103== indirectly lost: 0 bytes in 0 blocks ==3459103== possibly lost: 416 bytes in 1 blocks ==3459103== still reachable: 209,897,703 bytes in 44,795 blocks ==3459103== suppressed: 0 bytes in 0 blocks ==3459103== Reachable blocks (those to which a pointer was found) are not shown. ==3459103== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3459103== ==3459103== For lists of detected and suppressed errors, rerun with: -s ==3459103== ERROR SUMMARY: 1844068 errors from 6 contexts (suppressed: 0 from 0) Running the tests in ‘tests/respiratory.R’ failed. Complete output: > ## Data originally from Davis 1991 Stat. Med., as packaged in geepack > ## and transformed (center, id -> factor, idctr created, levels labeled) > library(lme4) Loading required package: Matrix > > if (.Platform$OS.type != "windows") { + load(system.file("testdata","respiratory.RData",package="lme4")) + m_glmer_4.L <- glmer(outcome~center+treat+sex+age+baseline+(1|idctr), + family=binomial,data=respiratory) + + m_glmer_4.GHQ5 <- glmer(outcome~center+treat+sex+age+baseline+(1|idctr), + family=binomial,data=respiratory,nAGQ=5) + + m_glmer_4.GHQ8 <- glmer(outcome~center+treat+sex+age+baseline+(1|idctr), + family=binomial,data=respiratory,nAGQ=8) + + m_glmer_4.GHQ16 <- glmer(outcome~center+treat+sex+age+baseline+(1|idctr), + family=binomial,data=respiratory,nAGQ=16) + } ## skip on windows (for speed) ==3614203== Invalid read of size 8 ==3614203== at 0x247DA545: coeff (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:925) ==3614203== by 0x247DA545: assignCoeff (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654) ==3614203== by 0x247DA545: assignCoeffByOuterInner (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:668) ==3614203== by 0x247DA545: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:347) ==3614203== by 0x247DA545: call_dense_assignment_loop >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785) ==3614203== by 0x247DA545: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954) ==3614203== by 0x247DA545: call_assignment_no_alias >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3614203== by 0x247DA545: call_assignment >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858) ==3614203== by 0x247DA545: call_assignment >, Eigen::Product > >, Eigen::Map >, 1> > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836) ==3614203== by 0x247DA545: operator= > >, Eigen::Map >, 1> > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66) ==3614203== by 0x247DA545: lme4::merPredD::updateXwts(Eigen::Array const&) (packages/tests-vg/lme4/src/predModule.cpp:221) ==3614203== by 0x247B2A2F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:274) ==3614203== by 0x247B2A2F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3614203== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3614203== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3614203== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3614203== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3614203== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3614203== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3614203== by 0x4F96BC: do_set (svn/R-devel/src/main/eval.c:3585) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== Address 0x1e4f9e10 is 48 bytes inside a block of size 21,360 free'd ==3614203== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3614203== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3614203== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3614203== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3614203== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3614203== by 0x4D78D5: promiseArgsEx (svn/R-devel/src/main/eval.c:3789) ==3614203== by 0x4F4712: Rf_promiseArgs (svn/R-devel/src/main/eval.c:3854) ==3614203== by 0x4F4712: Rf_eval (svn/R-devel/src/main/eval.c:1276) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F760A: R_execMethod (svn/R-devel/src/main/eval.c:2567) ==3614203== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==3614203== by 0x54202A: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==3614203== Block was alloc'd at ==3614203== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3614203== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3614203== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3614203== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3614203== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3614203== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3614203== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3614203== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3614203== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3614203== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3614203== ==3614203== Invalid read of size 16 ==3614203== at 0x247D31F4: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3614203== by 0x247D31F4: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3614203== by 0x247D31F4: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3614203== by 0x247D31F4: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3614203== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3614203== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3614203== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3614203== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3614203== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3614203== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3614203== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3614203== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3614203== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3614203== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3614203== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3614203== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3614203== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3614203== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3614203== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3614203== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3614203== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3614203== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3614203== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3614203== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3614203== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3614203== Address 0x1e4f9e10 is 48 bytes inside a block of size 21,360 free'd ==3614203== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3614203== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3614203== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3614203== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3614203== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3614203== by 0x4D78D5: promiseArgsEx (svn/R-devel/src/main/eval.c:3789) ==3614203== by 0x4F4712: Rf_promiseArgs (svn/R-devel/src/main/eval.c:3854) ==3614203== by 0x4F4712: Rf_eval (svn/R-devel/src/main/eval.c:1276) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F760A: R_execMethod (svn/R-devel/src/main/eval.c:2567) ==3614203== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==3614203== by 0x54202A: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==3614203== Block was alloc'd at ==3614203== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3614203== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3614203== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3614203== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3614203== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3614203== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3614203== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3614203== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3614203== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3614203== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3614203== ==3614203== Invalid read of size 16 ==3614203== at 0x247D3204: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3614203== by 0x247D3204: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3614203== by 0x247D3204: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3614203== by 0x247D3204: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3614203== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3614203== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3614203== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3614203== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3614203== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3614203== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3614203== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3614203== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3614203== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3614203== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3614203== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3614203== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3614203== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3614203== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3614203== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3614203== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3614203== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3614203== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3614203== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3614203== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3614203== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3614203== Address 0x1e4f9e20 is 64 bytes inside a block of size 21,360 free'd ==3614203== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3614203== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3614203== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3614203== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3614203== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3614203== by 0x4D78D5: promiseArgsEx (svn/R-devel/src/main/eval.c:3789) ==3614203== by 0x4F4712: Rf_promiseArgs (svn/R-devel/src/main/eval.c:3854) ==3614203== by 0x4F4712: Rf_eval (svn/R-devel/src/main/eval.c:1276) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F760A: R_execMethod (svn/R-devel/src/main/eval.c:2567) ==3614203== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==3614203== by 0x54202A: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==3614203== Block was alloc'd at ==3614203== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3614203== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3614203== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3614203== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3614203== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3614203== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3614203== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3614203== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3614203== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3614203== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3614203== ==3614203== Invalid read of size 16 ==3614203== at 0x247D3211: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3614203== by 0x247D3211: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3614203== by 0x247D3211: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3614203== by 0x247D3211: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3614203== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3614203== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3614203== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3614203== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3614203== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3614203== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3614203== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3614203== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3614203== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3614203== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3614203== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3614203== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3614203== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3614203== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3614203== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3614203== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3614203== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3614203== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3614203== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3614203== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3614203== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3614203== Address 0x1e4f9e30 is 80 bytes inside a block of size 21,360 free'd ==3614203== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3614203== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3614203== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3614203== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3614203== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3614203== by 0x4D78D5: promiseArgsEx (svn/R-devel/src/main/eval.c:3789) ==3614203== by 0x4F4712: Rf_promiseArgs (svn/R-devel/src/main/eval.c:3854) ==3614203== by 0x4F4712: Rf_eval (svn/R-devel/src/main/eval.c:1276) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F760A: R_execMethod (svn/R-devel/src/main/eval.c:2567) ==3614203== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==3614203== by 0x54202A: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==3614203== Block was alloc'd at ==3614203== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3614203== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3614203== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3614203== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3614203== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3614203== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3614203== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3614203== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3614203== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3614203== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3614203== ==3614203== Invalid read of size 16 ==3614203== at 0x247D321E: pmul (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:237) ==3614203== by 0x247D321E: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:959) ==3614203== by 0x247D321E: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:95) ==3614203== by 0x247D321E: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3614203== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3614203== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3614203== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3614203== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3614203== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3614203== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3614203== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3614203== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3614203== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3614203== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3614203== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3614203== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3614203== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3614203== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3614203== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3614203== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3614203== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3614203== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3614203== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3614203== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3614203== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3614203== Address 0x1e4f9e40 is 96 bytes inside a block of size 21,360 free'd ==3614203== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3614203== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3614203== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3614203== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3614203== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3614203== by 0x4D78D5: promiseArgsEx (svn/R-devel/src/main/eval.c:3789) ==3614203== by 0x4F4712: Rf_promiseArgs (svn/R-devel/src/main/eval.c:3854) ==3614203== by 0x4F4712: Rf_eval (svn/R-devel/src/main/eval.c:1276) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F760A: R_execMethod (svn/R-devel/src/main/eval.c:2567) ==3614203== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==3614203== by 0x54202A: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==3614203== Block was alloc'd at ==3614203== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3614203== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3614203== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3614203== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3614203== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3614203== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3614203== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3614203== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3614203== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3614203== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3614203== ==3614203== Invalid read of size 16 ==3614203== at 0x247D360C: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3614203== by 0x247D360C: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3614203== by 0x247D360C: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3614203== by 0x247D360C: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:201) ==3614203== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3614203== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3614203== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3614203== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3614203== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3614203== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3614203== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3614203== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3614203== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3614203== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3614203== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3614203== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3614203== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3614203== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3614203== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3614203== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3614203== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3614203== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3614203== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3614203== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3614203== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3614203== Address 0x1e4fabd0 is 3,568 bytes inside a block of size 21,360 free'd ==3614203== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3614203== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3614203== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3614203== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3614203== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3614203== by 0x4D78D5: promiseArgsEx (svn/R-devel/src/main/eval.c:3789) ==3614203== by 0x4F4712: Rf_promiseArgs (svn/R-devel/src/main/eval.c:3854) ==3614203== by 0x4F4712: Rf_eval (svn/R-devel/src/main/eval.c:1276) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F760A: R_execMethod (svn/R-devel/src/main/eval.c:2567) ==3614203== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==3614203== by 0x54202A: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==3614203== Block was alloc'd at ==3614203== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3614203== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3614203== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3614203== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3614203== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3614203== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3614203== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3614203== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3614203== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3614203== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3614203== ==3614203== Invalid read of size 16 ==3614203== at 0x247D361C: pmul (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:237) ==3614203== by 0x247D361C: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:959) ==3614203== by 0x247D361C: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:95) ==3614203== by 0x247D361C: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:201) ==3614203== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3614203== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3614203== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3614203== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3614203== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3614203== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3614203== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3614203== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3614203== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3614203== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3614203== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3614203== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3614203== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3614203== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3614203== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3614203== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3614203== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3614203== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3614203== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3614203== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3614203== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3614203== Address 0x1e4fabe0 is 3,584 bytes inside a block of size 21,360 free'd ==3614203== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3614203== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3614203== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3614203== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3614203== by 0x537ADE: Rf_cons (svn/R-devel/src/main/memory.c:2488) ==3614203== by 0x4D78D5: promiseArgsEx (svn/R-devel/src/main/eval.c:3789) ==3614203== by 0x4F4712: Rf_promiseArgs (svn/R-devel/src/main/eval.c:3854) ==3614203== by 0x4F4712: Rf_eval (svn/R-devel/src/main/eval.c:1276) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3614203== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F760A: R_execMethod (svn/R-devel/src/main/eval.c:2567) ==3614203== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==3614203== by 0x54202A: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==3614203== Block was alloc'd at ==3614203== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3614203== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3614203== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3614203== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3614203== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3614203== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3614203== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3614203== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3614203== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3614203== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3614203== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3614203== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3614203== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3614203== Error: Downdated VtV is not positive definite Execution halted ==3614203== ==3614203== HEAP SUMMARY: ==3614203== in use at exit: 206,493,055 bytes in 42,538 blocks ==3614203== total heap usage: 353,909 allocs, 311,371 frees, 926,870,044 bytes allocated ==3614203== ==3614203== LEAK SUMMARY: ==3614203== definitely lost: 0 bytes in 0 blocks ==3614203== indirectly lost: 0 bytes in 0 blocks ==3614203== possibly lost: 0 bytes in 0 blocks ==3614203== still reachable: 206,493,055 bytes in 42,538 blocks ==3614203== suppressed: 0 bytes in 0 blocks ==3614203== Reachable blocks (those to which a pointer was found) are not shown. ==3614203== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3614203== ==3614203== For lists of detected and suppressed errors, rerun with: -s ==3614203== ERROR SUMMARY: 4328343 errors from 7 contexts (suppressed: 0 from 0) Running the tests in ‘tests/testcrab.R’ failed. Complete output: > library("lme4") Loading required package: Matrix > L <- load(system.file("testdata","crabs_randdata2.Rda",package="lme4")) > ## randdata0: simulated data, in form suitable for plotting > ## randdata: simulated data, in form suitable for analysis > > ## fr ## alive/dead formula > ## fr2 ## proportion alive formula (use with weights=initial.snail.density) > > ## FIXME: there are still bigger differences than I'd like between the approaches > ## (mostly in the random-effects correlation). It's not clear who's right; > ## lme4 thinks its parameters are better, but ?? Could be explored further. > > if (FALSE) { + ## library(ggplot2) ## commented to avoid triggering Suggests: requirement + library(grid) + zmargin <- theme(panel.margin=unit(0,"lines")) + theme_set(theme_bw()) + g1 <- ggplot(randdata0,aes(x=snail.size,y=surv,colour=snail.size,fill=snail.size))+ + geom_hline(yintercept=1,colour="black")+ + stat_sum(aes(size=factor(..n..)),alpha=0.6)+ + facet_grid(.~ttt)+zmargin+ + geom_boxplot(fill=NA,outlier.colour=NULL,outlier.shape=3)+ ## set outliers to same colour as points + ## (hard to see which are outliers, but it doesn't really matter in this case) + scale_size_discrete("# obs",range=c(2,5)) + } > > if (.Platform$OS.type != "windows") { + t1 <- system.time(glmer1 <- glmer(fr2,weights=initial.snail.density, + family ="binomial", data=randdata)) + t1B <- system.time(glmer1B <- glmer(fr,family ="binomial", data=randdata)) + + res1 <- c(fixef(glmer1),c(VarCorr(glmer1)$plot)) + res1B <- c(fixef(glmer1B),c(VarCorr(glmer1B)$plot)) + p1 <- unlist(getME(glmer1,c("theta","beta"))) + stopifnot(all.equal(res1,res1B)) + + dfun <- update(glmer1,devFunOnly=TRUE) + stopifnot(all.equal(dfun(p1),c(-2*logLik(glmer1)))) + ## + ## library(lme4.0) ## version 0.999999.2 results + ## t1_lme4.0 <- system.time(glmer1X <- + ## glmer(fr2,weights=initial.snail.density, + ## family ="binomial", data=randdata)) + ## dput(c(fixef(glmer1X),c(VarCorr(glmer1X)$plot))) + ## p1X <- c(getME(glmer1X,"theta"),getME(glmer1X,"beta")) + p1X <- c(0.681301656652347, -1.14775239687404, 0.436143018123226, + 2.77730476938968, 0.609023583738824, -1.60055813739844, 2.0324468778545, + 0.624173873057839, -1.7908793509579, -2.44540201631615, -1.42365990002708, + -2.26780929006268, 0.700928084600075, -1.26220238391029, 0.369024582097804, + 3.44325347343035, 2.26400391093108) + stopifnot(all.equal(unname(p1),p1X,tolerance=0.03)) + dfun(p1X) + dfun(p1) + ## ~ 1.8 seconds elapsed time + lme4.0_res <- + structure(c(2.77730476938968, 0.609023583738824, -1.60055813739844, + 2.0324468778545, 0.624173873057839, -1.7908793509579, -2.44540201631615, + -1.42365990002708, -2.26780929006268, 0.700928084600075, -1.26220238391029, + 0.369024582097804, 3.44325347343035, 2.26400391093108, 0.464171947357232, + -0.532754465140956, -0.532754465140956, 0.801690946568518), + .Names = c("(Intercept)", + "crab.speciesS", "crab.speciesW", "crab.sizeS", "crab.sizeM", + "snail.sizeS", "crab.speciesS:crab.sizeS", "crab.speciesS:crab.sizeM", + "crab.speciesS:snail.sizeS", "crab.speciesW:snail.sizeS", + "crab.sizeS:snail.sizeS", "crab.sizeM:snail.sizeS", + "crab.speciesS:crab.sizeS:snail.sizeS", + "crab.speciesS:crab.sizeM:snail.sizeS", "", "", "", "")) + + stopifnot(all.equal(res1,lme4.0_res,tolerance=0.015)) + + + ## library("glmmADMB") + ## prop/weights formulation: ~ 7 seconds + ## t1_glmmadmb <- system.time(glmer1B <- glmmadmb(fr,family ="binomial", + ## corStruct="full",data=randdata)) + ## dput(c(fixef(glmer1B),c(VarCorr(glmer1B)$plot))) + glmmADMB_res <- structure(c(2.7773101267224, 0.609026276823218, -1.60055704634712, + 2.03244174458562, 0.624171008585953, -1.79088398816641, -2.44540300134182, + -1.42366043619683, -2.26780858382505, 0.700927141726545, -1.26219964572264, + 0.369029052442189, 3.44326297908383, 2.26403738918967, 0.46417, + -0.53253, -0.53253, 0.80169), .Names = c("(Intercept)", "crab.speciesS", + "crab.speciesW", "crab.sizeS", "crab.sizeM", "snail.sizeS", "crab.speciesS:crab.sizeS", + "crab.speciesS:crab.sizeM", "crab.speciesS:snail.sizeS", "crab.speciesW:snail.sizeS", + "crab.sizeS:snail.sizeS", "crab.sizeM:snail.sizeS", "crab.speciesS:crab.sizeS:snail.sizeS", + "crab.speciesS:crab.sizeM:snail.sizeS", "", "", "", "")) + + stopifnot(all.equal(res1B,glmmADMB_res,tolerance=0.015)) + } ## skip on windows (for speed) ==3631719== Invalid read of size 8 ==3631719== at 0x247DA545: coeff (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:925) ==3631719== by 0x247DA545: assignCoeff (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654) ==3631719== by 0x247DA545: assignCoeffByOuterInner (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:668) ==3631719== by 0x247DA545: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:347) ==3631719== by 0x247DA545: call_dense_assignment_loop >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785) ==3631719== by 0x247DA545: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954) ==3631719== by 0x247DA545: call_assignment_no_alias >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3631719== by 0x247DA545: call_assignment >, Eigen::Product > >, Eigen::Map >, 1>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858) ==3631719== by 0x247DA545: call_assignment >, Eigen::Product > >, Eigen::Map >, 1> > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836) ==3631719== by 0x247DA545: operator= > >, Eigen::Map >, 1> > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66) ==3631719== by 0x247DA545: lme4::merPredD::updateXwts(Eigen::Array const&) (packages/tests-vg/lme4/src/predModule.cpp:221) ==3631719== by 0x247B2A2F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:274) ==3631719== by 0x247B2A2F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3631719== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3631719== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3631719== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3631719== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3631719== by 0x4F96BC: do_set (svn/R-devel/src/main/eval.c:3585) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== Address 0x1e4e9640 is 48 bytes inside a block of size 7,664 free'd ==3631719== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3631719== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3631719== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3631719== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3631719== by 0x538B4D: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2710) ==3631719== by 0x4C5F9A: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3631719== by 0x4C5F9A: do_missing (svn/R-devel/src/main/envir.c:2789) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F7D61: do_if (svn/R-devel/src/main/eval.c:2709) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3631719== Block was alloc'd at ==3631719== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3631719== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3631719== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3631719== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3631719== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3631719== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3631719== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3631719== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3631719== ==3631719== Invalid read of size 16 ==3631719== at 0x247D31F4: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3631719== by 0x247D31F4: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3631719== by 0x247D31F4: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3631719== by 0x247D31F4: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3631719== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3631719== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3631719== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3631719== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3631719== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3631719== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3631719== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3631719== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3631719== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3631719== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3631719== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3631719== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3631719== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3631719== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3631719== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3631719== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3631719== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3631719== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3631719== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3631719== Address 0x1e4e9640 is 48 bytes inside a block of size 7,664 free'd ==3631719== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3631719== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3631719== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3631719== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3631719== by 0x538B4D: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2710) ==3631719== by 0x4C5F9A: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3631719== by 0x4C5F9A: do_missing (svn/R-devel/src/main/envir.c:2789) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F7D61: do_if (svn/R-devel/src/main/eval.c:2709) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3631719== Block was alloc'd at ==3631719== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3631719== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3631719== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3631719== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3631719== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3631719== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3631719== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3631719== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3631719== ==3631719== Invalid read of size 16 ==3631719== at 0x247D3204: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3631719== by 0x247D3204: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3631719== by 0x247D3204: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3631719== by 0x247D3204: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3631719== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3631719== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3631719== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3631719== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3631719== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3631719== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3631719== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3631719== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3631719== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3631719== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3631719== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3631719== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3631719== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3631719== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3631719== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3631719== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3631719== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3631719== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3631719== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3631719== Address 0x1e4e9650 is 64 bytes inside a block of size 7,664 free'd ==3631719== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3631719== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3631719== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3631719== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3631719== by 0x538B4D: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2710) ==3631719== by 0x4C5F9A: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3631719== by 0x4C5F9A: do_missing (svn/R-devel/src/main/envir.c:2789) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F7D61: do_if (svn/R-devel/src/main/eval.c:2709) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3631719== Block was alloc'd at ==3631719== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3631719== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3631719== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3631719== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3631719== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3631719== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3631719== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3631719== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3631719== ==3631719== Invalid read of size 16 ==3631719== at 0x247D3211: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3631719== by 0x247D3211: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3631719== by 0x247D3211: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3631719== by 0x247D3211: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3631719== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3631719== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3631719== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3631719== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3631719== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3631719== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3631719== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3631719== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3631719== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3631719== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3631719== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3631719== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3631719== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3631719== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3631719== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3631719== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3631719== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3631719== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3631719== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3631719== Address 0x1e4e9660 is 80 bytes inside a block of size 7,664 free'd ==3631719== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3631719== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3631719== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3631719== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3631719== by 0x538B4D: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2710) ==3631719== by 0x4C5F9A: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3631719== by 0x4C5F9A: do_missing (svn/R-devel/src/main/envir.c:2789) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F7D61: do_if (svn/R-devel/src/main/eval.c:2709) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3631719== Block was alloc'd at ==3631719== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3631719== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3631719== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3631719== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3631719== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3631719== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3631719== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3631719== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3631719== ==3631719== Invalid read of size 16 ==3631719== at 0x247D321E: pmul (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:237) ==3631719== by 0x247D321E: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:959) ==3631719== by 0x247D321E: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:95) ==3631719== by 0x247D321E: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:177) ==3631719== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3631719== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3631719== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3631719== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3631719== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3631719== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3631719== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3631719== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3631719== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3631719== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3631719== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3631719== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3631719== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3631719== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3631719== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3631719== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3631719== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3631719== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3631719== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3631719== Address 0x1e4e9670 is 96 bytes inside a block of size 7,664 free'd ==3631719== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3631719== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3631719== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3631719== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3631719== by 0x538B4D: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2710) ==3631719== by 0x4C5F9A: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3631719== by 0x4C5F9A: do_missing (svn/R-devel/src/main/envir.c:2789) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F7D61: do_if (svn/R-devel/src/main/eval.c:2709) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3631719== Block was alloc'd at ==3631719== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3631719== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3631719== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3631719== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3631719== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3631719== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3631719== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3631719== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3631719== ==3631719== Invalid read of size 16 ==3631719== at 0x247D360C: ploadu (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:603) ==3631719== by 0x247D360C: ploadt (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969) ==3631719== by 0x247D360C: load (R-devel/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:203) ==3631719== by 0x247D360C: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:201) ==3631719== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3631719== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3631719== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3631719== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3631719== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3631719== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3631719== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3631719== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3631719== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3631719== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3631719== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3631719== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3631719== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3631719== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3631719== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3631719== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3631719== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3631719== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3631719== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3631719== Address 0x1e4e9840 is 560 bytes inside a block of size 7,664 free'd ==3631719== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3631719== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3631719== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3631719== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3631719== by 0x538B4D: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2710) ==3631719== by 0x4C5F9A: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3631719== by 0x4C5F9A: do_missing (svn/R-devel/src/main/envir.c:2789) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F7D61: do_if (svn/R-devel/src/main/eval.c:2709) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3631719== Block was alloc'd at ==3631719== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3631719== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3631719== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3631719== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3631719== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3631719== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3631719== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3631719== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3631719== ==3631719== Invalid read of size 16 ==3631719== at 0x247D361C: pmul (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:237) ==3631719== by 0x247D361C: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:959) ==3631719== by 0x247D361C: pmadd (R-devel/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:95) ==3631719== by 0x247D361C: Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>::run(long, long, Eigen::internal::const_blas_data_mapper const&, Eigen::internal::const_blas_data_mapper const&, double*, long, double) [clone .isra.0] (R-devel/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:201) ==3631719== by 0x247E7D5B: run >, Eigen::Matrix, Eigen::Matrix > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253) ==3631719== by 0x247E7D5B: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388) ==3631719== by 0x247E7D5B: void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix const&, double const&) (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:376) ==3631719== by 0x247DD3BE: scaleAndAddTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361) ==3631719== by 0x247DD3BE: evalTo > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349) ==3631719== by 0x247DD3BE: run (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148) ==3631719== by 0x247DD3BE: call_assignment_no_alias, Eigen::Product >, Eigen::Matrix, 0>, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3631719== by 0x247DD3BE: run, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:223) ==3631719== by 0x247DD3BE: call_assignment_no_alias, Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> >, Eigen::internal::assign_op > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890) ==3631719== by 0x247DD3BE: _set_noalias, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797) ==3631719== by 0x247DD3BE: PlainObjectBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594) ==3631719== by 0x247DD3BE: Matrix, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::Product > >, Eigen::Matrix, 0> > > (R-devel/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423) ==3631719== by 0x247DD3BE: lme4::merPredD::linPred(double const&) const (packages/tests-vg/lme4/src/predModule.cpp:95) ==3631719== by 0x247B286F: internal_glmerWrkIter (packages/tests-vg/lme4/src/external.cpp:290) ==3631719== by 0x247B286F: pwrssUpdate (packages/tests-vg/lme4/src/external.cpp:330) ==3631719== by 0x247B8E6C: glmerLaplace (packages/tests-vg/lme4/src/external.cpp:386) ==3631719== by 0x4A91E9: R_doDotCall (svn/R-devel/src/main/dotcode.c:770) ==3631719== by 0x4E4283: bcEval_loop (svn/R-devel/src/main/eval.c:8700) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3631719== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3631719== Address 0x1e4e9850 is 576 bytes inside a block of size 7,664 free'd ==3631719== at 0x4846B83: free (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:989) ==3631719== by 0x5354C5: ReleaseLargeFreeVectors (svn/R-devel/src/main/memory.c:1167) ==3631719== by 0x5354C5: RunGenCollect (svn/R-devel/src/main/memory.c:1951) ==3631719== by 0x5354C5: R_gc_internal (svn/R-devel/src/main/memory.c:3237) ==3631719== by 0x538B4D: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2710) ==3631719== by 0x4C5F9A: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3631719== by 0x4C5F9A: do_missing (svn/R-devel/src/main/envir.c:2789) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F7D61: do_if (svn/R-devel/src/main/eval.c:2709) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F80E4: do_begin (svn/R-devel/src/main/eval.c:3001) ==3631719== by 0x4F49B2: Rf_eval (svn/R-devel/src/main/eval.c:1230) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F475A: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x4F475A: Rf_eval (svn/R-devel/src/main/eval.c:1278) ==3631719== Block was alloc'd at ==3631719== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==3631719== by 0x539581: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2894) ==3631719== by 0x44084B: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==3631719== by 0x44084B: Rf_allocMatrix (svn/R-devel/src/main/array.c:236) ==3631719== by 0x162E0DA3: modelmatrix (svn/R-devel/src/library/stats/src/model.c:676) ==3631719== by 0x4A76CE: do_External (svn/R-devel/src/main/dotcode.c:573) ==3631719== by 0x4E63CC: bcEval_loop (svn/R-devel/src/main/eval.c:8150) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7533) ==3631719== by 0x4F4317: bcEval (svn/R-devel/src/main/eval.c:7518) ==3631719== by 0x4F464A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==3631719== by 0x4F65DD: R_execClosure (svn/R-devel/src/main/eval.c:2398) ==3631719== by 0x4F729F: applyClosure_core (svn/R-devel/src/main/eval.c:2314) ==3631719== by 0x4F7D21: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) ==3631719== by 0x53FD2B: dispatchMethod (svn/R-devel/src/main/objects.c:473) ==3631719== ==3631719== ==3631719== More than 10000000 total errors detected. I'm not reporting any more. ==3631719== Final error counts will be inaccurate. Go fix your program! ==3631719== Rerun with --error-limit=no to disable this cutoff. Note ==3631719== that errors may occur in your program without prior warning from ==3631719== Valgrind, because errors are no longer being displayed. ==3631719== Error: Downdated VtV is not positive definite In addition: Warning message: In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, : Model failed to converge with max|grad| = 0.0797245 (tol = 0.002, component 1) See ?lme4::convergence and ?lme4::troubleshooting. Timing stopped at: 98.83 0.339 99.8 Execution halted ==3631719== ==3631719== HEAP SUMMARY: ==3631719== in use at exit: 203,005,067 bytes in 43,032 blocks ==3631719== total heap usage: 2,441,452 allocs, 2,398,420 frees, 2,259,184,029 bytes allocated ==3631719== ==3631719== LEAK SUMMARY: ==3631719== definitely lost: 0 bytes in 0 blocks ==3631719== indirectly lost: 0 bytes in 0 blocks ==3631719== possibly lost: 0 bytes in 0 blocks ==3631719== still reachable: 203,005,067 bytes in 43,032 blocks ==3631719== suppressed: 0 bytes in 0 blocks ==3631719== Reachable blocks (those to which a pointer was found) are not shown. ==3631719== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3631719== ==3631719== For lists of detected and suppressed errors, rerun with: -s ==3631719== ERROR SUMMARY: 10000000 errors from 7 contexts (suppressed: 0 from 0) * checking package vignettes ... OK * checking re-building of vignette outputs ... [187s/188s] OK * DONE Status: 1 ERROR