==2109566== Memcheck, a memory error detector ==2109566== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==2109566== Using Valgrind-3.24.0 and LibVEX; rerun with -h for copyright info ==2109566== Command: /data/blackswan/ripley/R/R-devel-vg/bin/exec/R --vanilla ==2109566== R Under development (unstable) (2025-08-15 r88608) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > pkgname <- "apLCMS" > source(file.path(R.home("share"), "R", "examples-header.R")) > options(warn = 1) > library('apLCMS') Loading required package: foreach Loading required package: iterators Loading required package: ROCR Loading required package: Rcpp Loading required package: doParallel Loading required package: parallel ==2109566== Warning: invalid file descriptor -1 in syscall close() > > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv') > base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv') > cleanEx() > nameEx("adduct.table") > ### * adduct.table > > flush(stderr()); flush(stdout()) > > ### Name: adduct.table > ### Title: A table of potential adducts. > ### Aliases: adduct.table > ### Keywords: datasets > > ### ** Examples > > data(metabolite.table) > data(adduct.table) > known.table.example<-make.known.table(metabolite.table[1001:1020,], adduct.table[1:4,]) (1 3) (3 4) (3 5) (3 6) (6 7) (7 8) (8 9) (9 10) (9 11) (11 12) (11 13) (11 14) (14 15) (14 16) (14 17) (14 18) (14 19) (14 20) (14 21) *(2 3) *(3 4) *(4 5) *(5 6) *(6 7) *(7 8) *(8 9) *(9 10) *(10 11) *(11 12) *(12 13) *(13 14) *(14 15) *(15 16) *(16 17) *(17 18) *(18 19) *(19 20) *(20 21) *(21 22) *(22 23) *(23 24) *(24 25) *(25 26) *(26 27) *(27 28) *(28 29) *(29 30) *(30 31) *(31 32) *(32 33) > > > > cleanEx() > nameEx("adjust.time") > ### * adjust.time > > flush(stderr()); flush(stdout()) > > ### Name: adjust.time > ### Title: Adjust retention time across spectra. > ### Aliases: adjust.time > ### Keywords: models > > ### ** Examples > > data(features) > adjusted<-adjust.time(features, colors=c("red","blue","green","cyan")) **** performing time correction **** m/z tolerance level: 9.13566073407808e-06 time tolerance level: 133.928280923025 the template is sample 4 Warning: executing %dopar% sequentially: no parallel backend registered sample 1 using 659, sample 2 using 670, sample 3 using 830, > > > > cleanEx() > nameEx("feature.align") > ### * feature.align > > flush(stderr()); flush(stdout()) > > ### Name: feature.align > ### Title: Align peaks from spectra into a feature table. > ### Aliases: feature.align > ### Keywords: models > > ### ** Examples > > > > > cleanEx() > nameEx("features") > ### * features > > flush(stderr()); flush(stdout()) > > ### Name: features > ### Title: Sample feature tables from 4 profiles > ### Aliases: features > ### Keywords: datasets > > ### ** Examples > > data(features) > > > > cleanEx() > nameEx("find.tol") > ### * find.tol > > flush(stderr()); flush(stdout()) > > ### Name: find.tol > ### Title: An internal function that is not supposed to be directly > ### accessed by the user. Find m/z tolerance level. > ### Aliases: find.tol > ### Keywords: models > > ### ** Examples > > data(prof) > find.tol(prof[[1]][,1]) [1] 1.813651e-05 > > > > cleanEx() > nameEx("make.known.table") > ### * make.known.table > > flush(stderr()); flush(stdout()) > > ### Name: make.known.table > ### Title: Producing a table of known features based on a table of > ### metabolites and a table of allowable adducts. > ### Aliases: make.known.table > ### Keywords: models > > ### ** Examples > > data(metabolite.table) > data(adduct.table) > known.table.example<-make.known.table(metabolite.table[1001:1020,], adduct.table[1:4,]) (1 3) (3 4) (3 5) (3 6) (6 7) (7 8) (8 9) (9 10) (9 11) (11 12) (11 13) (11 14) (14 15) (14 16) (14 17) (14 18) (14 19) (14 20) (14 21) *(2 3) *(3 4) *(4 5) *(5 6) *(6 7) *(7 8) *(8 9) *(9 10) *(10 11) *(11 12) *(12 13) *(13 14) *(14 15) *(15 16) *(16 17) *(17 18) *(18 19) *(19 20) *(20 21) *(21 22) *(22 23) *(23 24) *(24 25) *(25 26) *(26 27) *(27 28) *(28 29) *(29 30) *(30 31) *(31 32) *(32 33) > > > > cleanEx() > nameEx("metabolite.table") > ### * metabolite.table > > flush(stderr()); flush(stdout()) > > ### Name: metabolite.table > ### Title: A known metabolite table based on HMDB. > ### Aliases: metabolite.table > ### Keywords: datasets > > ### ** Examples > > data(metabolite.table) > data(adduct.table) > known.table.example<-make.known.table(metabolite.table[1001:1020,], adduct.table[1:4,]) (1 3) (3 4) (3 5) (3 6) (6 7) (7 8) (8 9) (9 10) (9 11) (11 12) (11 13) (11 14) (14 15) (14 16) (14 17) (14 18) (14 19) (14 20) (14 21) *(2 3) *(3 4) *(4 5) *(5 6) *(6 7) *(7 8) *(8 9) *(9 10) *(10 11) *(11 12) *(12 13) *(13 14) *(14 15) *(15 16) *(16 17) *(17 18) *(18 19) *(19 20) *(20 21) *(21 22) *(22 23) *(23 24) *(24 25) *(25 26) *(26 27) *(27 28) *(28 29) *(29 30) *(30 31) *(31 32) *(32 33) > > > > cleanEx() > nameEx("present.cdf.3d") > ### * present.cdf.3d > > flush(stderr()); flush(stdout()) > > ### Name: present.cdf.3d > ### Title: Generates 3 dimensional plots for LCMS data. > ### Aliases: present.cdf.3d > > ### ** Examples > > data(prof) > present.cdf.3d(prof[[2]],time.lim=c(250,400), mz.lim=c(400,500)) > > > > cleanEx() > nameEx("proc.cdf.2d") > ### * proc.cdf.2d > > flush(stderr()); flush(stdout()) > > ### Name: proc.cdf.2d > ### Title: Compute a 2D Binned Kernel Density Estimate from LC/MS data in > ### CDF format. > ### Aliases: proc.cdf.2d > ### Keywords: distribution density > > ### ** Examples > > library(msdata) > filepath <- system.file("microtofq", package = "msdata") > file <- list.files(filepath, pattern="MM14.mzML", + full.names=TRUE, recursive = TRUE) > peakInfo <- proc.cdf.2d(file) ==2109566== Mismatched new/delete size value: 8 ==2109566== at 0x4847B51: operator delete(void*, unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:1181) ==2109566== by 0xFFC5E4AA: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:665) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== Address 0x109721040 is 0 bytes inside a block of size 1,287,440 alloc'd ==2109566== at 0x484577A: operator new[](unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:729) ==2109566== by 0xFFC5CAEB: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:569) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== ==2109566== Mismatched free() / delete / delete [] ==2109566== at 0x4847BB8: operator delete(void*, unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:1181) ==2109566== by 0xFFC5E4AA: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:665) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== Address 0x109721040 is 0 bytes inside a block of size 1,287,440 alloc'd ==2109566== at 0x484577A: operator new[](unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:729) ==2109566== by 0xFFC5CAEB: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:569) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== ==2109566== Mismatched new/delete size value: 8 ==2109566== at 0x4847B51: operator delete(void*, unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:1181) ==2109566== by 0xFFC5E4C2: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:666) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== Address 0x1050f38c0 is 0 bytes inside a block of size 1,287,440 alloc'd ==2109566== at 0x484577A: operator new[](unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:729) ==2109566== by 0xFFC5CAF7: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:570) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== ==2109566== Mismatched free() / delete / delete [] ==2109566== at 0x4847BB8: operator delete(void*, unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:1181) ==2109566== by 0xFFC5E4C2: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:666) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== Address 0x1050f38c0 is 0 bytes inside a block of size 1,287,440 alloc'd ==2109566== at 0x484577A: operator new[](unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:729) ==2109566== by 0xFFC5CAF7: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:570) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== ==2109566== Mismatched new/delete size value: 8 ==2109566== at 0x4847B51: operator delete(void*, unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:1181) ==2109566== by 0xFFC5E4DA: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:667) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== Address 0x106d1d040 is 0 bytes inside a block of size 1,287,440 alloc'd ==2109566== at 0x484577A: operator new[](unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:729) ==2109566== by 0xFFC5CB04: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:571) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== ==2109566== Mismatched free() / delete / delete [] ==2109566== at 0x4847BB8: operator delete(void*, unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:1181) ==2109566== by 0xFFC5E4DA: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:667) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== Address 0x106d1d040 is 0 bytes inside a block of size 1,287,440 alloc'd ==2109566== at 0x484577A: operator new[](unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:729) ==2109566== by 0xFFC5CB04: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:571) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== ==2109566== Invalid read of size 8 ==2109566== at 0xFFC5AC4F: FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) (packages/tests-vg/apLCMS/src/CalDen.cpp:521) ==2109566== by 0xFFC5E805: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:669) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== Address 0xffb69240 is 0 bytes after a block of size 55,632 alloc'd ==2109566== at 0x484577A: operator new[](unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:729) ==2109566== by 0xFFC58034: FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) (packages/tests-vg/apLCMS/src/CalDen.cpp:82) ==2109566== by 0xFFC5E805: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:669) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== ==2109566== Invalid read of size 8 ==2109566== at 0xFFC5BBE9: FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) (packages/tests-vg/apLCMS/src/CalDen.cpp:527) ==2109566== by 0xFFC5E805: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:669) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== Address 0xff70eb50 is 0 bytes after a block of size 55,632 alloc'd ==2109566== at 0x484577A: operator new[](unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:729) ==2109566== by 0xFFC5801E: FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) (packages/tests-vg/apLCMS/src/CalDen.cpp:81) ==2109566== by 0xFFC5E805: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:669) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== ==2109566== Invalid read of size 8 ==2109566== at 0xFFC5BBEF: FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) (packages/tests-vg/apLCMS/src/CalDen.cpp:528) ==2109566== by 0xFFC5E805: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:669) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== by 0x4F562C: do_set (svn/R-devel/src/main/eval.c:3567) ==2109566== Address 0xffb69240 is 0 bytes after a block of size 55,632 alloc'd ==2109566== at 0x484577A: operator new[](unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:729) ==2109566== by 0xFFC58034: FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) (packages/tests-vg/apLCMS/src/CalDen.cpp:82) ==2109566== by 0xFFC5E805: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:669) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== ==2109566== Mismatched new/delete size value: 8 ==2109566== at 0x4847B51: operator delete(void*, unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:1181) ==2109566== by 0xFFC5C133: FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) (packages/tests-vg/apLCMS/src/CalDen.cpp:531) ==2109566== by 0xFFC5E805: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:669) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== Address 0xff701200 is 0 bytes inside a block of size 55,632 alloc'd ==2109566== at 0x484577A: operator new[](unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:729) ==2109566== by 0xFFC5801E: FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) (packages/tests-vg/apLCMS/src/CalDen.cpp:81) ==2109566== by 0xFFC5E805: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:669) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== ==2109566== Mismatched free() / delete / delete [] ==2109566== at 0x4847BB8: operator delete(void*, unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:1181) ==2109566== by 0xFFC5C133: FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) (packages/tests-vg/apLCMS/src/CalDen.cpp:531) ==2109566== by 0xFFC5E805: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:669) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== Address 0xff701200 is 0 bytes inside a block of size 55,632 alloc'd ==2109566== at 0x484577A: operator new[](unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:729) ==2109566== by 0xFFC5801E: FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) (packages/tests-vg/apLCMS/src/CalDen.cpp:81) ==2109566== by 0xFFC5E805: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:669) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== ==2109566== Mismatched new/delete size value: 8 ==2109566== at 0x4847B51: operator delete(void*, unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:1181) ==2109566== by 0xFFC5C14E: FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) (packages/tests-vg/apLCMS/src/CalDen.cpp:532) ==2109566== by 0xFFC5E805: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:669) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== Address 0xffb5b8f0 is 0 bytes inside a block of size 55,632 alloc'd ==2109566== at 0x484577A: operator new[](unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:729) ==2109566== by 0xFFC58034: FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) (packages/tests-vg/apLCMS/src/CalDen.cpp:82) ==2109566== by 0xFFC5E805: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:669) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== ==2109566== Mismatched free() / delete / delete [] ==2109566== at 0x4847BB8: operator delete(void*, unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:1181) ==2109566== by 0xFFC5C14E: FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) (packages/tests-vg/apLCMS/src/CalDen.cpp:532) ==2109566== by 0xFFC5E805: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:669) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== Address 0xffb5b8f0 is 0 bytes inside a block of size 55,632 alloc'd ==2109566== at 0x484577A: operator new[](unsigned long) (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:729) ==2109566== by 0xFFC58034: FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) (packages/tests-vg/apLCMS/src/CalDen.cpp:82) ==2109566== by 0xFFC5E805: calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) (packages/tests-vg/apLCMS/src/CalDen.cpp:669) ==2109566== by 0xFFC64585: _apLCMS_calculateDensity (packages/tests-vg/apLCMS/src/RcppExports.cpp:53) ==2109566== by 0x4A631F: R_doDotCall (svn/R-devel/src/main/dotcode.c:825) ==2109566== by 0x4A6A63: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==2109566== by 0x4E24CC: bcEval_loop (svn/R-devel/src/main/eval.c:8118) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7501) ==2109566== by 0x4F0437: bcEval (svn/R-devel/src/main/eval.c:7486) ==2109566== by 0x4F076A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==2109566== by 0x4F26DD: R_execClosure (svn/R-devel/src/main/eval.c:2393) ==2109566== by 0x4F33A6: applyClosure_core (svn/R-devel/src/main/eval.c:2306) ==2109566== by 0x4F0875: Rf_applyClosure (svn/R-devel/src/main/eval.c:2328) ==2109566== by 0x4F0875: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==2109566== user.self 22.78, sys.self 0.68, elapsed 23.61, user.child 0, sys.child 0 > > > > cleanEx() detaching ‘package:msdata’ > nameEx("prof") > ### * prof > > flush(stderr()); flush(stdout()) > > ### Name: prof > ### Title: Sample profile data after noise filtration by the run filter > ### Aliases: prof > ### Keywords: datasets > > ### ** Examples > > > > > cleanEx() > nameEx("prof.to.features") > ### * prof.to.features > > flush(stderr()); flush(stdout()) > > ### Name: prof.to.features > ### Title: Generate feature table from noise-removed LC/MS profile > ### Aliases: prof.to.features > ### Keywords: models > > ### ** Examples > > > > > ### *